Variant report

Variant	rs74075822
Chromosome Location	chr1:58148873-58148874
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs17116136	0.84[AFR][1000 genomes]
rs4409680	0.84[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs4636488	0.84[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs56323134	0.84[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs60982032	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74075803	0.84[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs74075813	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74075814	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74077735	0.84[AFR][1000 genomes]
rs74077743	0.84[AFR][1000 genomes]
rs74077744	0.84[AFR][1000 genomes]
rs74077745	0.84[AFR][1000 genomes]
rs7540673	0.84[AFR][1000 genomes];0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1015057	chr1:57976993-58793962	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv530017	chr1:58002290-58669736	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv871620	chr1:58127171-58157778	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:58147400-58149200	Enhancers	Fetal Muscle Trunk	muscle
2	chr1:58147400-58149200	Enhancers	Fetal Muscle Leg	muscle
3	chr1:58147400-58149400	Enhancers	Skeletal Muscle Female	skeletal muscle
4	chr1:58148000-58149600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
5	chr1:58148600-58149200	Enhancers	ES-I3 Cell Line	embryonic stem cell
6	chr1:58148600-58149400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr1:58148600-58149400	Enhancers	HUES6 Cell Line	embryonic stem cell
8	chr1:58148800-58149200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr1:58148800-58149200	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
10	chr1:58148800-58149400	Enhancers	H1 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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