Variant report

Variant	rs74077735
Chromosome Location	chr1:58093029-58093030
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs17116108	1.00[AMR][1000 genomes]
rs17116114	1.00[AMR][1000 genomes]
rs17116118	1.00[AMR][1000 genomes]
rs17116122	1.00[AMR][1000 genomes]
rs17116136	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4409680	1.00[AFR][1000 genomes]
rs4636488	1.00[AFR][1000 genomes]
rs56323134	1.00[AFR][1000 genomes]
rs60982032	0.90[AFR][1000 genomes]
rs74075803	1.00[AFR][1000 genomes]
rs74075813	0.96[AFR][1000 genomes]
rs74075814	0.96[AFR][1000 genomes]
rs74075822	0.84[AFR][1000 genomes]
rs74077733	1.00[AMR][1000 genomes]
rs74077743	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74077744	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74077745	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7540673	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv817216	chr1:57801783-58130775	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1012555	chr1:57950355-58103389	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv1015057	chr1:57976993-58793962	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv530017	chr1:58002290-58669736	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
5	nsv871684	chr1:58021206-58096379	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:58085400-58093600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr1:58090000-58098200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr1:58090200-58098000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr1:58090200-58098000	Weak transcription	HUES48 Cell Line	embryonic stem cell
5	chr1:58091000-58098800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr1:58091200-58098000	Weak transcription	H1 Cell Line	embryonic stem cell
7	chr1:58091400-58097600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr1:58092000-58097400	Weak transcription	H9 Cell Line	embryonic stem cell
9	chr1:58092200-58094800	Weak transcription	Fetal Brain Male	brain
10	chr1:58092200-58095400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
11	chr1:58092200-58095600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
12	chr1:58092200-58097400	Weak transcription	HUES6 Cell Line	embryonic stem cell
13	chr1:58092200-58098200	Weak transcription	HUES64 Cell Line	embryonic stem cell
14	chr1:58092200-58099000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr1:58092200-58099000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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