Variant report
| Variant | rs74085288 |
|---|---|
| Chromosome Location | chr1:70996263-70996264 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:1)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr1:70994251..70996830-chr1:71512472..71514167,2 | MCF-7 | breast: |
(count:1 , 50 per page) page:
1
| No. | lncRNA name | Chromosome Location | lncRNA alias |
|---|---|---|---|
| 1 | lnc-CTH-10 | chr1:70996209-70997175 | NONHSAT003861 |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000050628 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:14)
| rs_ID | r2[population] |
|---|---|
| rs12058271 | 1.00[EUR][1000 genomes] |
| rs12070022 | 1.00[EUR][1000 genomes] |
| rs12074313 | 1.00[EUR][1000 genomes] |
| rs12092951 | 1.00[EUR][1000 genomes] |
| rs12098192 | 1.00[EUR][1000 genomes] |
| rs1577367 | 1.00[EUR][1000 genomes] |
| rs17131342 | 0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs17131407 | 1.00[EUR][1000 genomes] |
| rs1932059 | 1.00[EUR][1000 genomes] |
| rs28415396 | 1.00[EUR][1000 genomes] |
| rs2992040 | 1.00[EUR][1000 genomes] |
| rs72926266 | 1.00[EUR][1000 genomes] |
| rs7516046 | 1.00[EUR][1000 genomes] |
| rs7544159 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv999219 | chr1:70730556-71014911 | Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 49 gene(s) | inside rSNPs | diseases |
| 2 | nsv945994 | chr1:70996237-71002462 | Enhancers | Chromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
