Variant report

Variant	rs74086548
Chromosome Location	chr12:39860978-39860979
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs1913189	1.00[AMR][1000 genomes]
rs55756650	1.00[AMR][1000 genomes]
rs56114183	1.00[AMR][1000 genomes]
rs56224231	1.00[AMR][1000 genomes]
rs57847806	1.00[AMR][1000 genomes]
rs58046207	1.00[AMR][1000 genomes]
rs58297221	1.00[AMR][1000 genomes]
rs60725986	1.00[AFR][1000 genomes]
rs74086512	1.00[AMR][1000 genomes]
rs74086516	1.00[AMR][1000 genomes]
rs74086528	1.00[AMR][1000 genomes]
rs74086539	1.00[AMR][1000 genomes]
rs74086540	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74086549	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74086569	1.00[AMR][1000 genomes]
rs74088332	1.00[AMR][1000 genomes]
rs74088333	1.00[AMR][1000 genomes]
rs74088334	1.00[AMR][1000 genomes]
rs74088335	1.00[AMR][1000 genomes]
rs74088336	1.00[AMR][1000 genomes]
rs74088338	1.00[AMR][1000 genomes]
rs74088343	1.00[AMR][1000 genomes]
rs74088344	1.00[AMR][1000 genomes]
rs74088350	1.00[AMR][1000 genomes]
rs74088351	1.00[AMR][1000 genomes]
rs74088356	1.00[AMR][1000 genomes]
rs74088360	1.00[AMR][1000 genomes]
rs74088362	1.00[AMR][1000 genomes]
rs74088365	1.00[AMR][1000 genomes]
rs74088368	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531527	chr12:39680812-40182822	Enhancers Weak transcription Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
2	nsv1044049	chr12:39845078-39922808	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv1051709	chr12:39846990-39899051	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv976606	chr12:39856893-39860999	Enhancers Weak transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:39859200-39861000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
2	chr12:39860600-39862400	Enhancers	Primary T cells fromperipheralblood	blood
3	chr12:39860800-39861200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
4	chr12:39860800-39861200	Enhancers	Primary T regulatory cells fromperipheralblood	blood
5	chr12:39860800-39861200	Enhancers	Primary T killer memory cells from peripheral blood	blood
6	chr12:39860800-39861200	Enhancers	Fetal Brain Male	brain
7	chr12:39860800-39861400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
8	chr12:39860800-39861400	Enhancers	Primary T helper naive cells from peripheral blood	blood
9	chr12:39860800-39861400	Enhancers	Primary T helper cells PMA-I stimulated	--
10	chr12:39860800-39861800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
11	chr12:39860800-39862400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
12	chr12:39860800-39862600	Enhancers	Primary T helper cells fromperipheralblood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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