Variant report

Variant	rs74086549
Chromosome Location	chr12:39861446-39861447
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:43)
CpG islands
(count:0)
Chromatin interactive
region (count:0)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:43 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	YY1	chr12:39861243-39861587	K562	blood:	n/a	n/a
2	TBL1XR1	chr12:39861139-39861559	GM12878	blood:	n/a	n/a
3	EBF1	chr12:39861288-39861542	GM12878	blood:	n/a	n/a
4	CEBPB	chr12:39861026-39861766	GM12878	blood:	n/a	n/a
5	MEF2A	chr12:39860958-39861659	GM12878	blood:	n/a	n/a
6	JUND	chr12:39861282-39861600	K562	blood:	n/a	n/a
7	MTA3	chr12:39861132-39861648	GM12878	blood:	n/a	n/a
8	IKZF1	chr12:39861115-39861750	GM12878	blood:	n/a	n/a
9	BCL11A	chr12:39861200-39861574	GM12878	blood:	n/a	n/a
10	ATF2	chr12:39861004-39861752	GM12878	blood:	n/a	n/a
11	RUNX3	chr12:39860933-39861674	GM12878	blood:	n/a	n/a
12	PML	chr12:39861065-39861737	GM12878	blood:	n/a	n/a
13	NFIC	chr12:39860966-39861807	GM12878	blood:	n/a	n/a
14	MTA3	chr12:39861082-39861779	GM12878	blood:	n/a	n/a
15	NFIC	chr12:39860968-39861770	GM12878	blood:	n/a	n/a
16	BCLAF1	chr12:39861085-39861617	GM12878	blood:	n/a	n/a
17	FOS	chr12:39861303-39861536	MCF10A-Er-Src	breast:	n/a	n/a
18	RUNX3	chr12:39860932-39861752	GM12878	blood:	n/a	n/a
19	ATF2	chr12:39861088-39861613	GM12878	blood:	n/a	n/a
20	FOS	chr12:39861271-39861601	MCF10A-Er-Src	breast:	n/a	n/a
21	NFATC1	chr12:39861042-39861671	GM12878	blood:	n/a	n/a
22	JUN	chr12:39861270-39861497	K562	blood:	n/a	n/a
23	YY1	chr12:39861247-39861598	GM12892	blood:	n/a	n/a
24	FOXM1	chr12:39860968-39861582	GM12878	blood:	n/a	n/a
25	IRF4	chr12:39861075-39861613	GM12878	blood:	n/a	n/a
26	NFATC1	chr12:39861049-39861827	GM12878	blood:	n/a	n/a
27	STAT5A	chr12:39861130-39861614	GM12878	blood:	n/a	n/a
28	FOSL2	chr12:39861311-39861685	SK-N-SH	brain:	n/a	n/a
29	YY1	chr12:39861214-39861554	GM12891	blood:	n/a	n/a
30	FOS	chr12:39861273-39861611	MCF10A-Er-Src	breast:	n/a	n/a
31	BATF	chr12:39861167-39861548	GM12878	blood:	n/a	n/a
32	FOXM1	chr12:39860978-39861705	GM12878	blood:	n/a	n/a
33	FOS	chr12:39861271-39861591	MCF10A-Er-Src	breast:	n/a	n/a
34	YY1	chr12:39861222-39861603	GM12878	blood:	n/a	n/a
35	STAT5A	chr12:39861089-39861684	GM12878	blood:	n/a	n/a
36	YY1	chr12:39861216-39861620	GM12878	blood:	n/a	n/a
37	MEF2A	chr12:39861101-39861667	GM12878	blood:	n/a	n/a
38	BCL3	chr12:39861047-39861590	GM12878	blood:	n/a	n/a
39	YY1	chr12:39861261-39861619	GM12878	blood:	n/a	n/a
40	EP300	chr12:39861037-39861517	GM12878	blood:	n/a	n/a
41	BATF	chr12:39861093-39861599	GM12878	blood:	n/a	n/a
42	YY1	chr12:39861198-39861597	GM12892	blood:	n/a	n/a
43	MEF2C	chr12:39861027-39861638	GM12878	blood:	n/a	n/a

No data

Variant related genes	Relation type
ENSG00000255991	TF binding region

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs1913189	1.00[AMR][1000 genomes]
rs55756650	1.00[AMR][1000 genomes]
rs56114183	1.00[AMR][1000 genomes]
rs56224231	1.00[AMR][1000 genomes]
rs57847806	1.00[AMR][1000 genomes]
rs58046207	1.00[AMR][1000 genomes]
rs58297221	1.00[AMR][1000 genomes]
rs60725986	1.00[AFR][1000 genomes]
rs74086512	1.00[AMR][1000 genomes]
rs74086516	1.00[AMR][1000 genomes]
rs74086528	1.00[AMR][1000 genomes]
rs74086539	1.00[AMR][1000 genomes]
rs74086540	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74086548	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74086569	1.00[AMR][1000 genomes]
rs74088332	1.00[AMR][1000 genomes]
rs74088333	1.00[AMR][1000 genomes]
rs74088334	1.00[AMR][1000 genomes]
rs74088335	1.00[AMR][1000 genomes]
rs74088336	1.00[AMR][1000 genomes]
rs74088338	1.00[AMR][1000 genomes]
rs74088343	1.00[AMR][1000 genomes]
rs74088344	1.00[AMR][1000 genomes]
rs74088350	1.00[AMR][1000 genomes]
rs74088351	1.00[AMR][1000 genomes]
rs74088356	1.00[AMR][1000 genomes]
rs74088360	1.00[AMR][1000 genomes]
rs74088362	1.00[AMR][1000 genomes]
rs74088365	1.00[AMR][1000 genomes]
rs74088368	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531527	chr12:39680812-40182822	Enhancers Weak transcription Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
2	nsv1044049	chr12:39845078-39922808	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv1051709	chr12:39846990-39899051	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:39860600-39862400	Enhancers	Primary T cells fromperipheralblood	blood
2	chr12:39860800-39861800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
3	chr12:39860800-39862400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
4	chr12:39860800-39862600	Enhancers	Primary T helper cells fromperipheralblood	blood
5	chr12:39861000-39861600	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
6	chr12:39861000-39862200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
7	chr12:39861200-39861600	Flanking Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
8	chr12:39861200-39861800	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
9	chr12:39861200-39861800	Active TSS	Duodenum Mucosa	Duodenum
10	chr12:39861200-39862000	Flanking Active TSS	Primary T killer memory cells from peripheral blood	blood
11	chr12:39861200-39862000	Flanking Active TSS	GM12878-XiMat	blood
12	chr12:39861400-39861600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
13	chr12:39861400-39861600	Enhancers	Stomach Mucosa	stomach
14	chr12:39861400-39861800	Flanking Active TSS	Primary T helper memory cells from peripheral blood 2	blood
15	chr12:39861400-39861800	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
16	chr12:39861400-39861800	Active TSS	Primary T helper naive cells fromperipheralblood	blood
17	chr12:39861400-39862000	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links