Variant report

Variant	rs74086716
Chromosome Location	chr14:97008907-97008908
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr14:97008419-97008947	HepG2	liver:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:96998656..97003736-chr14:97006318..97010679,5	MCF-7	breast:
2	chr14:97007480..97011210-chr14:97011511..97014615,3	K562	blood:

Variant related genes	Relation type
PAPOLA	TF binding region
ENSG00000090060	Chromatin interaction

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs17094176	1.00[AMR][1000 genomes]
rs28701482	1.00[AMR][1000 genomes]
rs55688559	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56137414	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56265756	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56296574	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58550318	1.00[AMR][1000 genomes]
rs59282186	1.00[AMR][1000 genomes]
rs59461473	1.00[AMR][1000 genomes]
rs60121386	1.00[AMR][1000 genomes]
rs60248045	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7146082	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7146728	1.00[AMR][1000 genomes]
rs73349211	1.00[AMR][1000 genomes]
rs73349218	1.00[AMR][1000 genomes]
rs73353790	1.00[AMR][1000 genomes]
rs73357044	1.00[AMR][1000 genomes]
rs73363250	1.00[AMR][1000 genomes]
rs73363256	1.00[AMR][1000 genomes]
rs73363276	1.00[AMR][1000 genomes]
rs73363284	1.00[AMR][1000 genomes]
rs73363291	1.00[AMR][1000 genomes]
rs73363299	1.00[AMR][1000 genomes]
rs73365110	1.00[AMR][1000 genomes]
rs73365112	1.00[AMR][1000 genomes]
rs74086703	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74086710	1.00[AMR][1000 genomes]
rs74086718	1.00[AMR][1000 genomes]
rs74086723	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74086724	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74086728	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74086730	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74086735	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74086741	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74086800	1.00[AMR][1000 genomes]
rs74090353	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74090354	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1042409	chr14:96832303-97115668	Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
2	nsv542178	chr14:96832303-97115668	Active TSS Enhancers Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
3	esv3442210	chr14:96878392-97038700	Weak transcription Flanking Active TSS Strong transcription Enhancers Genic enhancers Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
4	esv1802671	chr14:96942352-97035680	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
5	nsv1052499	chr14:96974524-97034805	Strong transcription Enhancers Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
6	esv1793036	chr14:96983291-97023059	Strong transcription Weak transcription Enhancers Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
7	nsv1048302	chr14:97000845-97250538	Bivalent/Poised TSS Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
8	esv1791939	chr14:97001679-97027747	Strong transcription Weak transcription Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
9	nsv1041078	chr14:97001679-97279220	Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
10	nsv1050075	chr14:97004951-97279220	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:96978000-97019400	Weak transcription	Aorta	Aorta
2	chr14:96979600-97022400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr14:96979800-97019200	Weak transcription	Small Intestine	intestine
4	chr14:96980800-97020600	Weak transcription	Stomach Mucosa	stomach
5	chr14:96982000-97031400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr14:96984800-97020800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr14:96984800-97039400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr14:96987200-97010200	Weak transcription	HSMMtube	muscle
9	chr14:96988200-97012600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr14:96989000-97018800	Weak transcription	Lung	lung
11	chr14:96989200-97018600	Weak transcription	Brain Substantia Nigra	brain
12	chr14:96991400-97022400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
13	chr14:96992200-97011600	Weak transcription	NHLF	lung
14	chr14:96993000-97018800	Weak transcription	Gastric	stomach
15	chr14:96993000-97018800	Weak transcription	Pancreas	Pancrea
16	chr14:96993000-97018800	Weak transcription	Spleen	Spleen
17	chr14:96993200-97012400	Weak transcription	Right Ventricle	heart
18	chr14:96993200-97018800	Weak transcription	Esophagus	oesophagus
19	chr14:96993600-97017400	Weak transcription	Rectal Smooth Muscle	rectum
20	chr14:96993600-97018800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
21	chr14:96993600-97018800	Weak transcription	Ovary	ovary
22	chr14:96994000-97010200	Weak transcription	NHEK	skin
23	chr14:96994000-97011000	Weak transcription	Left Ventricle	heart
24	chr14:96994000-97018800	Weak transcription	Skeletal Muscle Male	skeletal muscle
25	chr14:96994400-97018800	Weak transcription	Colonic Mucosa	Colon
26	chr14:96996400-97010400	Weak transcription	K562	blood
27	chr14:96996400-97010800	Weak transcription	Sigmoid Colon	Sigmoid Colon
28	chr14:96997800-97015600	Weak transcription	Fetal Intestine Small	intestine
29	chr14:96997800-97015800	Weak transcription	Fetal Stomach	stomach
30	chr14:96997800-97016200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
31	chr14:96997800-97018800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
32	chr14:96998400-97010600	Weak transcription	Fetal Brain Female	brain
33	chr14:96998400-97012600	Weak transcription	Fetal Muscle Leg	muscle
34	chr14:96999000-97016200	Weak transcription	Thymus	Thymus
35	chr14:96999200-97010400	Weak transcription	Brain Germinal Matrix	brain
36	chr14:96999200-97010800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
37	chr14:96999200-97013800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
38	chr14:96999200-97018800	Weak transcription	Cortex derived primary cultured neurospheres	brain
39	chr14:96999200-97018800	Weak transcription	Psoas Muscle	Psoas
40	chr14:96999200-97020600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
41	chr14:96999200-97022200	Weak transcription	Placenta Amnion	Placenta Amnion
42	chr14:96999400-97040600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
43	chr14:96999800-97013800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
44	chr14:97001000-97009600	Weak transcription	Hela-S3	cervix
45	chr14:97001000-97010200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
46	chr14:97001000-97010200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
47	chr14:97001000-97010200	Weak transcription	Fetal Heart	heart
48	chr14:97001000-97010200	Weak transcription	Skeletal Muscle Female	skeletal muscle
49	chr14:97001000-97010200	Weak transcription	GM12878-XiMat	blood
50	chr14:97001000-97010400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links