Variant report

Variant	rs74086724
Chromosome Location	chr14:97033919-97033920
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:97033169..97036076-chr14:97041923..97044671,2	MCF-7	breast:
2	chr14:97032756..97036569-chr14:97036806..97040099,4	K562	blood:
3	chr14:97030602..97033303-chr14:97033642..97035609,3	K562	blood:

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs17094176	1.00[AMR][1000 genomes]
rs28701482	1.00[AMR][1000 genomes]
rs55688559	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56137414	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56265756	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56296574	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58550318	1.00[AMR][1000 genomes]
rs59282186	1.00[AMR][1000 genomes]
rs59461473	1.00[AMR][1000 genomes]
rs60248045	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7146082	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7146728	1.00[AMR][1000 genomes]
rs73349211	1.00[AMR][1000 genomes]
rs73349218	1.00[AMR][1000 genomes]
rs73353790	1.00[AMR][1000 genomes]
rs73357044	1.00[AMR][1000 genomes]
rs73363276	1.00[AMR][1000 genomes]
rs73363284	1.00[AMR][1000 genomes]
rs73363291	1.00[AMR][1000 genomes]
rs73363299	1.00[AMR][1000 genomes]
rs73365110	1.00[AMR][1000 genomes]
rs73365112	1.00[AMR][1000 genomes]
rs74086703	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74086710	1.00[AMR][1000 genomes]
rs74086716	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74086718	1.00[AMR][1000 genomes]
rs74086723	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74086728	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74086730	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74086735	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74086741	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74086800	1.00[AMR][1000 genomes]
rs74090353	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74090354	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1042409	chr14:96832303-97115668	Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
2	nsv542178	chr14:96832303-97115668	Active TSS Enhancers Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
3	esv3442210	chr14:96878392-97038700	Weak transcription Flanking Active TSS Strong transcription Enhancers Genic enhancers Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
4	esv1802671	chr14:96942352-97035680	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
5	nsv1052499	chr14:96974524-97034805	Strong transcription Enhancers Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
6	nsv1048302	chr14:97000845-97250538	Bivalent/Poised TSS Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
7	nsv1041078	chr14:97001679-97279220	Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
8	nsv1050075	chr14:97004951-97279220	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:96984800-97039400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr14:96999400-97040600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr14:97006400-97040400	Strong transcription	Monocytes-CD14+_RO01746	blood
4	chr14:97007600-97035200	Strong transcription	Primary B cells from peripheral blood	blood
5	chr14:97007600-97036000	Strong transcription	HUES64 Cell Line	embryonic stem cell
6	chr14:97007800-97034800	Strong transcription	HUES48 Cell Line	embryonic stem cell
7	chr14:97008000-97036000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
8	chr14:97008200-97035800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
9	chr14:97008200-97039400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr14:97008400-97035200	Strong transcription	Dnd41	blood
11	chr14:97008400-97038400	Strong transcription	Primary monocytes fromperipheralblood	blood
12	chr14:97008600-97037000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr14:97008600-97040200	Strong transcription	Fetal Thymus	thymus
14	chr14:97009600-97034200	Strong transcription	Rectal Mucosa Donor 31	rectum
15	chr14:97009600-97037200	Strong transcription	HSMM	muscle
16	chr14:97010200-97040200	Strong transcription	Primary B cells from cord blood	blood
17	chr14:97011400-97034200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
18	chr14:97016800-97039200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
19	chr14:97017400-97035400	Strong transcription	iPS-18 Cell Line	embryonic stem cell
20	chr14:97018400-97034400	Strong transcription	Primary T helper cells PMA-I stimulated	--
21	chr14:97019600-97042800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr14:97019800-97038800	Weak transcription	Small Intestine	intestine
23	chr14:97020200-97039400	Weak transcription	Psoas Muscle	Psoas
24	chr14:97020200-97039600	Weak transcription	Gastric	stomach
25	chr14:97020200-97042600	Weak transcription	Esophagus	oesophagus
26	chr14:97020400-97040400	Weak transcription	Aorta	Aorta
27	chr14:97020400-97042800	Weak transcription	Spleen	Spleen
28	chr14:97020800-97040800	Weak transcription	Colonic Mucosa	Colon
29	chr14:97021000-97034200	Weak transcription	Stomach Mucosa	stomach
30	chr14:97022800-97036600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
31	chr14:97023200-97039200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
32	chr14:97023200-97040400	Weak transcription	Cortex derived primary cultured neurospheres	brain
33	chr14:97023200-97046400	Weak transcription	K562	blood
34	chr14:97023400-97036800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
35	chr14:97023600-97039800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
36	chr14:97023600-97039800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
37	chr14:97023600-97041600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
38	chr14:97023600-97043200	Weak transcription	Right Ventricle	heart
39	chr14:97023800-97036800	Weak transcription	Brain Substantia Nigra	brain
40	chr14:97023800-97038000	Weak transcription	Brain Angular Gyrus	brain
41	chr14:97023800-97040200	Weak transcription	Fetal Stomach	stomach
42	chr14:97023800-97040600	Weak transcription	Pancreas	Pancrea
43	chr14:97023800-97040800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
44	chr14:97023800-97042400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
45	chr14:97023800-97043200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
46	chr14:97023800-97044800	Weak transcription	Lung	lung
47	chr14:97023800-97045600	Weak transcription	Fetal Intestine Small	intestine
48	chr14:97023800-97048800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
49	chr14:97023800-97050200	Weak transcription	Brain Inferior Temporal Lobe	brain
50	chr14:97024000-97036600	Weak transcription	Fetal Brain Female	brain

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