Variant report

Variant	rs74086741
Chromosome Location	chr14:97050350-97050351
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:16)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:16 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr14:97050324..97051208-chr14:97145144..97146022,4	MCF-7	breast:
2	chr14:97050265..97051308-chr14:97136874..97138151,3	MCF-7	breast:
3	chr14:96967068..96968654-chr14:97048247..97050965,2	K562	blood:
4	chr14:97050306..97050831-chr14:99733017..99733851,2	MCF-7	breast:
5	chr14:97040818..97044745-chr14:97045778..97050959,6	K562	blood:
6	chr14:97050319..97051064-chr14:97320992..97321806,2	MCF-7	breast:
7	chr14:97050283..97051241-chr14:99732793..99733539,2	K562	blood:
8	chr14:97049592..97051389-chr14:97206656..97209020,34	MCF-7	breast:
9	chr14:97050164..97051186-chr14:97207133..97208455,7	K562	blood:
10	chr14:97048738..97051124-chr14:97052648..97054947,2	K562	blood:
11	chr14:97050328..97051225-chr14:97318893..97319811,3	MCF-7	breast:
12	chr14:97050333..97051177-chr14:97318947..97319978,4	MCF-7	breast:
13	chr14:97050250..97050993-chr14:97155440..97155960,2	MCF-7	breast:
14	chr14:97049843..97051026-chr14:97131982..97133064,8	MCF-7	breast:
15	chr14:97049647..97051758-chr14:97207410..97208429,16	MCF-7	breast:
16	chr14:97050109..97051246-chr14:97131819..97133058,6	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000258979	Chromatin interaction
ENSG00000100749	Chromatin interaction
ENSG00000090060	Chromatin interaction

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs17094176	1.00[AMR][1000 genomes]
rs28701482	1.00[AMR][1000 genomes]
rs55688559	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56137414	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56265756	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56296574	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58550318	1.00[AMR][1000 genomes]
rs59282186	1.00[AMR][1000 genomes]
rs59461473	1.00[AMR][1000 genomes]
rs60248045	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7146082	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73349211	1.00[AMR][1000 genomes]
rs73349218	1.00[AMR][1000 genomes]
rs73353790	1.00[AMR][1000 genomes]
rs73357044	1.00[AMR][1000 genomes]
rs73363299	1.00[AMR][1000 genomes]
rs73365110	1.00[AMR][1000 genomes]
rs73365112	1.00[AMR][1000 genomes]
rs74086703	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74086710	1.00[AMR][1000 genomes]
rs74086716	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74086718	1.00[AMR][1000 genomes]
rs74086723	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74086724	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74086728	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74086730	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74086735	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74086800	1.00[AMR][1000 genomes]
rs74090353	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74090354	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1042409	chr14:96832303-97115668	Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
2	nsv542178	chr14:96832303-97115668	Active TSS Enhancers Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
3	nsv1048302	chr14:97000845-97250538	Bivalent/Poised TSS Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
4	nsv1041078	chr14:97001679-97279220	Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
5	nsv1050075	chr14:97004951-97279220	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:97043400-97058800	Weak transcription	Right Atrium	heart
2	chr14:97043600-97050400	Weak transcription	Right Ventricle	heart
3	chr14:97046600-97054200	Enhancers	Fetal Brain Male	brain
4	chr14:97047400-97050800	Weak transcription	Cortex derived primary cultured neurospheres	brain
5	chr14:97047800-97051400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr14:97048600-97050800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr14:97048600-97050800	Weak transcription	HUES6 Cell Line	embryonic stem cell
8	chr14:97048800-97051000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
9	chr14:97049000-97050800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr14:97049200-97050400	Weak transcription	Brain Germinal Matrix	brain
11	chr14:97049200-97055400	Weak transcription	Esophagus	oesophagus
12	chr14:97049600-97050800	Enhancers	Primary B cells from peripheral blood	blood
13	chr14:97049600-97054000	Enhancers	Fetal Brain Female	brain
14	chr14:97049800-97051200	Bivalent Enhancer	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr14:97050000-97050800	Enhancers	Fetal Kidney	kidney
16	chr14:97050000-97051000	Enhancers	Pancreas	Pancrea
17	chr14:97050000-97051200	Enhancers	H1 Cell Line	embryonic stem cell
18	chr14:97050200-97050400	Enhancers	Brain Angular Gyrus	brain
19	chr14:97050200-97050400	Enhancers	Brain Inferior Temporal Lobe	brain
20	chr14:97050200-97051000	Bivalent Enhancer	Fetal Muscle Leg	muscle
21	chr14:97050200-97051000	Enhancers	Gastric	stomach
22	chr14:97050200-97051800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
23	chr14:97050200-97053200	Weak transcription	Spleen	Spleen
24	chr14:97050200-97058600	Weak transcription	GM12878-XiMat	blood

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