Variant report

Variant	rs74086786
Chromosome Location	chr1:71286392-71286393
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10889891	0.83[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10889892	0.94[ASN][1000 genomes]
rs11209705	0.86[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11803673	0.99[ASN][1000 genomes]
rs11810467	0.86[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12026099	0.87[ASN][1000 genomes]
rs12026456	0.86[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12034333	0.88[ASN][1000 genomes]
rs12040186	0.83[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12049445	0.99[ASN][1000 genomes]
rs12049500	0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1335002	0.86[ASN][1000 genomes]
rs1591386	0.88[ASN][1000 genomes]
rs17131473	0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17131476	0.85[ASN][1000 genomes]
rs17131485	0.88[ASN][1000 genomes]
rs1889598	0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1932050	0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2068652	0.88[ASN][1000 genomes]
rs2152121	0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2152122	0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2782768	0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2782769	0.87[ASN][1000 genomes]
rs2782770	0.88[ASN][1000 genomes]
rs2820540	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2820541	0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2820542	0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs34087524	0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs34745168	0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs35615554	0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs36021131	0.88[ASN][1000 genomes]
rs4320734	0.80[ASN][1000 genomes]
rs55884889	0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6661453	0.87[ASN][1000 genomes]
rs6684573	0.85[ASN][1000 genomes]
rs74086973	0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs74086974	0.88[ASN][1000 genomes]
rs74086976	0.88[ASN][1000 genomes]
rs74086980	0.88[ASN][1000 genomes]
rs74086985	0.85[ASN][1000 genomes]
rs74086993	0.85[ASN][1000 genomes]
rs915220	0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1845198	chr1:71274759-71514969	Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Enhancers Weak transcription Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:71285000-71286400	Enhancers	Pancreatic Islets	Pancreatic Islet
2	chr1:71285600-71286400	Enhancers	Primary monocytes fromperipheralblood	blood
3	chr1:71286200-71286400	Enhancers	Primary hematopoietic stem cells short term culture	blood

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