Variant report

Variant	rs74086974
Chromosome Location	chr1:71335753-71335754
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10889891	0.87[ASN][1000 genomes]
rs10889892	0.82[ASN][1000 genomes]
rs11209705	0.89[ASN][1000 genomes]
rs11803673	0.87[ASN][1000 genomes]
rs11810467	0.89[ASN][1000 genomes]
rs12026099	0.80[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12026456	0.89[ASN][1000 genomes]
rs12034333	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12040186	0.89[ASN][1000 genomes]
rs12049445	0.89[ASN][1000 genomes]
rs12121333	0.80[AFR][1000 genomes]
rs12134247	0.80[AFR][1000 genomes]
rs12135331	0.80[AFR][1000 genomes]
rs17131467	0.82[AFR][1000 genomes]
rs17131473	0.94[ASN][1000 genomes]
rs17131476	0.80[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17131485	0.89[ASN][1000 genomes]
rs2068652	0.89[ASN][1000 genomes]
rs34087524	0.93[ASN][1000 genomes]
rs34745168	0.93[ASN][1000 genomes]
rs35615554	0.93[ASN][1000 genomes]
rs36021131	0.89[ASN][1000 genomes]
rs55884889	0.90[ASN][1000 genomes]
rs6661453	0.80[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6684573	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs74086786	0.88[ASN][1000 genomes]
rs74086973	0.94[ASN][1000 genomes]
rs74086976	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74086980	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74086985	0.80[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs74086993	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1845198	chr1:71274759-71514969	Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Enhancers Weak transcription Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv830148	chr1:71310366-71483932	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:71330800-71343200	Weak transcription	K562	blood
2	chr1:71331600-71337200	Weak transcription	Fetal Heart	heart
3	chr1:71332800-71336600	Weak transcription	Monocytes-CD14+_RO01746	blood
4	chr1:71332800-71337000	Weak transcription	Primary monocytes fromperipheralblood	blood
5	chr1:71332800-71338800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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