Variant report
| Variant | rs74088332 |
|---|---|
| Chromosome Location | chr12:39676493-39676494 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:29)
| rs_ID | r2[population] |
|---|---|
| rs1913189 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs55756650 | 1.00[AMR][1000 genomes] |
| rs56114183 | 1.00[AMR][1000 genomes] |
| rs56224231 | 1.00[AMR][1000 genomes] |
| rs57847806 | 1.00[AMR][1000 genomes] |
| rs58046207 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs58297221 | 1.00[AMR][1000 genomes] |
| rs74086512 | 1.00[AMR][1000 genomes] |
| rs74086516 | 1.00[AMR][1000 genomes] |
| rs74086528 | 1.00[AMR][1000 genomes] |
| rs74086539 | 1.00[AMR][1000 genomes] |
| rs74086540 | 1.00[AMR][1000 genomes] |
| rs74086548 | 1.00[AMR][1000 genomes] |
| rs74086549 | 1.00[AMR][1000 genomes] |
| rs74086569 | 1.00[AMR][1000 genomes] |
| rs74088333 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs74088334 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs74088335 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs74088336 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs74088338 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs74088343 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs74088344 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs74088350 | 1.00[AMR][1000 genomes] |
| rs74088351 | 1.00[AMR][1000 genomes] |
| rs74088356 | 1.00[AMR][1000 genomes] |
| rs74088360 | 1.00[AMR][1000 genomes] |
| rs74088362 | 1.00[AMR][1000 genomes] |
| rs74088365 | 1.00[AMR][1000 genomes] |
| rs74088368 | 1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv899013 | chr12:39567945-39732430 | Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 4 gene(s) | inside rSNPs | diseases |
| 2 | nsv832375 | chr12:39599362-39784722 | Enhancers Weak transcription Strong transcription Genic enhancers Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 3 gene(s) | inside rSNPs | diseases |
| 3 | nsv832376 | chr12:39633080-39808277 | Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 3 gene(s) | inside rSNPs | diseases |
| 4 | nsv470286 | chr12:39651893-39729700 | Weak transcription Genic enhancers Strong transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 3 gene(s) | inside rSNPs | diseases |
| 5 | nsv558589 | chr12:39667861-39768356 | Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 2 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr12:39674800-39690200 | Weak transcription | ES-I3 Cell Line | embryonic stem cell |
