The 2.0 version of rSNPBase

Variant report

Variant rs74088343
Chromosome Location chr12:39705085-39705086
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:65 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr12:39685200-39714400 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
2 chr12:39686600-39722400 Weak transcription GM12878-XiMat blood
3 chr12:39686600-39725400 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
4 chr12:39686800-39729800 Weak transcription Sigmoid Colon Sigmoid Colon
5 chr12:39686800-39738800 Weak transcription Pancreas Pancrea
6 chr12:39687200-39726400 Weak transcription Fetal Intestine Small intestine
7 chr12:39687600-39723800 Weak transcription Duodenum Mucosa Duodenum
8 chr12:39688400-39709800 Weak transcription Ovary ovary
9 chr12:39688400-39724600 Weak transcription Esophagus oesophagus
10 chr12:39688400-39726400 Weak transcription Aorta Aorta
11 chr12:39689000-39724000 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
12 chr12:39689600-39725400 Weak transcription Primary T helper 17 cells PMA-I stimulated --
13 chr12:39690400-39715200 Strong transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
14 chr12:39690600-39711600 Weak transcription Placenta Placenta
15 chr12:39693800-39705600 Strong transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
16 chr12:39695000-39726400 Weak transcription Fetal Intestine Large intestine
17 chr12:39695000-39726400 Weak transcription HepG2 liver
18 chr12:39695600-39724000 Weak transcription Brain Inferior Temporal Lobe brain
19 chr12:39695600-39742000 Strong transcription H9 Derived Neuron Cultured Cells ES cell derived
20 chr12:39696200-39705400 Weak transcription HSMMtube muscle
21 chr12:39696600-39762200 Weak transcription Fetal Brain Male brain
22 chr12:39696800-39705800 Strong transcription Ganglion Eminence derived primary cultured neurospheres brain
23 chr12:39696800-39712000 Strong transcription Cortex derived primary cultured neurospheres brain
24 chr12:39697200-39705400 Weak transcription Primary T regulatory cells fromperipheralblood blood
25 chr12:39697400-39705400 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
26 chr12:39697600-39711000 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
27 chr12:39697800-39771800 Weak transcription Fetal Kidney kidney
28 chr12:39698000-39724400 Weak transcription Skeletal Muscle Male skeletal muscle
29 chr12:39698200-39724400 Weak transcription K562 blood
30 chr12:39698600-39724000 Weak transcription Brain Anterior Caudate brain
31 chr12:39698600-39724000 Weak transcription Brain Substantia Nigra brain
32 chr12:39698600-39725200 Weak transcription Primary T helper cells fromperipheralblood blood
33 chr12:39698600-39725400 Weak transcription Brain Hippocampus Middle brain
34 chr12:39698800-39711000 Weak transcription Rectal Mucosa Donor 29 rectum
35 chr12:39699600-39710000 Weak transcription Primary T killer memory cells from peripheral blood blood
36 chr12:39699600-39724600 Weak transcription Brain Angular Gyrus brain
37 chr12:39699600-39760600 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
38 chr12:39700000-39721400 Weak transcription Fetal Heart heart
39 chr12:39700600-39723400 Weak transcription Adipose Nuclei Adipose
40 chr12:39700600-39724000 Weak transcription HUES64 Cell Line embryonic stem cell
41 chr12:39700800-39724000 Weak transcription Duodenum Smooth Muscle Duodenum
42 chr12:39701000-39711000 Weak transcription Skeletal Muscle Female skeletal muscle
43 chr12:39701000-39726400 Weak transcription Left Ventricle heart
44 chr12:39701200-39716400 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
45 chr12:39701400-39724000 Weak transcription Breast Myoepithelial Primary Cells Breast
46 chr12:39701600-39706600 Weak transcription A549 lung
47 chr12:39701600-39709600 Weak transcription Hela-S3 cervix
48 chr12:39701600-39710400 Weak transcription Rectal Mucosa Donor 31 rectum
49 chr12:39701600-39716400 Weak transcription Brain Germinal Matrix brain
50 chr12:39701600-39718200 Weak transcription iPS-18 Cell Line embryonic stem cell

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Last update: Aug 31, 2015