Variant report

Variant	rs74089823
Chromosome Location	chr1:76746056-76746057
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:76741759..76743474-chr1:76745342..76747848,2	K562	blood:

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs11162110	0.90[AFR][1000 genomes]
rs11162117	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11801014	0.94[AFR][1000 genomes]
rs11805688	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12067841	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12067933	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12068141	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12079387	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17098543	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17098603	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17098606	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28408528	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56066060	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58321457	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74089827	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74089849	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74089867	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74092742	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv870621	chr1:76620313-76997071	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv1499	chr1:76704981-76749688	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv534168	chr1:76718950-77039352	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:76735600-76750600	Weak transcription	Left Ventricle	heart
2	chr1:76739600-76749200	Weak transcription	Primary T cells from cord blood	blood
3	chr1:76744600-76746200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr1:76745000-76747000	Weak transcription	Fetal Brain Male	brain
5	chr1:76745000-76747000	Weak transcription	Fetal Brain Female	brain
6	chr1:76745000-76749000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr1:76745200-76747000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr1:76745200-76747000	Weak transcription	Brain Hippocampus Middle	brain
9	chr1:76745200-76747000	Weak transcription	Right Atrium	heart
10	chr1:76745200-76747200	Weak transcription	Brain Cingulate Gyrus	brain
11	chr1:76745400-76747000	Weak transcription	H1 Cell Line	embryonic stem cell
12	chr1:76745400-76747000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr1:76745400-76747000	Weak transcription	Brain Anterior Caudate	brain
14	chr1:76745400-76747000	Weak transcription	Brain Substantia Nigra	brain
15	chr1:76745400-76747000	Weak transcription	Fetal Thymus	thymus
16	chr1:76745400-76747200	Weak transcription	Esophagus	oesophagus
17	chr1:76745400-76750600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
18	chr1:76745400-76751000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
19	chr1:76745600-76746800	Weak transcription	Fetal Muscle Trunk	muscle
20	chr1:76745600-76761000	Weak transcription	Aorta	Aorta
21	chr1:76745800-76746400	Weak transcription	Brain Inferior Temporal Lobe	brain
22	chr1:76745800-76747200	Weak transcription	Fetal Stomach	stomach
23	chr1:76745800-76750600	Weak transcription	Fetal Kidney	kidney
24	chr1:76745800-76755400	Weak transcription	Fetal Lung	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links