Variant report

Variant	rs74089827
Chromosome Location	chr1:76747810-76747811
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs11162110	0.86[AFR][1000 genomes]
rs11162117	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11801014	0.90[AFR][1000 genomes]
rs11805688	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12067841	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12067933	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12068141	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12079387	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17098543	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17098603	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17098606	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28408528	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56066060	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58321457	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74089823	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74089849	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74089867	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74092742	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv870621	chr1:76620313-76997071	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv1499	chr1:76704981-76749688	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv534168	chr1:76718950-77039352	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:76735600-76750600	Weak transcription	Left Ventricle	heart
2	chr1:76739600-76749200	Weak transcription	Primary T cells from cord blood	blood
3	chr1:76745000-76749000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr1:76745400-76750600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr1:76745400-76751000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr1:76745600-76761000	Weak transcription	Aorta	Aorta
7	chr1:76745800-76750600	Weak transcription	Fetal Kidney	kidney
8	chr1:76745800-76755400	Weak transcription	Fetal Lung	lung
9	chr1:76746200-76750400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr1:76747400-76749000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr1:76747400-76750400	Weak transcription	Fetal Thymus	thymus
12	chr1:76747400-76756200	Weak transcription	H1 Cell Line	embryonic stem cell
13	chr1:76747600-76756400	Weak transcription	Fetal Brain Male	brain
14	chr1:76747600-76757000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr1:76747800-76750800	Weak transcription	Brain Anterior Caudate	brain
16	chr1:76747800-76756200	Weak transcription	Brain Hippocampus Middle	brain
17	chr1:76747800-76756400	Weak transcription	Cortex derived primary cultured neurospheres	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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