Variant report

Variant	rs74089867
Chromosome Location	chr1:76762339-76762340
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs11162110	0.81[AFR][1000 genomes]
rs11162117	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11801014	0.93[AFR][1000 genomes]
rs11805688	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12067841	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12067933	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12068141	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12079387	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17098543	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17098603	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17098606	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28408528	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56066060	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58321457	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74089823	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74089827	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74089849	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74092742	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv870621	chr1:76620313-76997071	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv534168	chr1:76718950-77039352	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:76755800-76783000	Weak transcription	Fetal Lung	lung
2	chr1:76756600-76764200	Weak transcription	HUES6 Cell Line	embryonic stem cell
3	chr1:76756600-76764400	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr1:76756800-76763800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr1:76757200-76764200	Weak transcription	Fetal Thymus	thymus
6	chr1:76757200-76764400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr1:76758200-76762400	Enhancers	iPS-18 Cell Line	embryonic stem cell
8	chr1:76758400-76762400	Enhancers	iPS-20b Cell Line	embryonic stem cell
9	chr1:76758800-76762400	Enhancers	HUES64 Cell Line	embryonic stem cell
10	chr1:76759000-76762400	Enhancers	HUES48 Cell Line	embryonic stem cell
11	chr1:76759800-76762400	Enhancers	iPS-15b Cell Line	embryonic stem cell
12	chr1:76759800-76766600	Weak transcription	Brain Substantia Nigra	brain
13	chr1:76760400-76779200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr1:76760600-76762600	Enhancers	Primary T helper cells fromperipheralblood	blood
15	chr1:76760600-76762800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
16	chr1:76760800-76764600	Weak transcription	Primary T cells fromperipheralblood	blood
17	chr1:76761000-76766200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
18	chr1:76761200-76763800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr1:76761200-76764000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
20	chr1:76761200-76768200	Enhancers	Primary T cells from cord blood	blood
21	chr1:76761400-76765200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
22	chr1:76761600-76764000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
23	chr1:76761800-76762400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
24	chr1:76761800-76762400	Enhancers	Primary T helper naive cells from peripheral blood	blood
25	chr1:76762000-76764200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
26	chr1:76762200-76763200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
27	chr1:76762200-76764000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
28	chr1:76762200-76764000	Weak transcription	Primary T helper cells PMA-I stimulated	--

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