Variant report

Variant	rs74097075
Chromosome Location	chr1:86155888-86155889
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:86045595..86048161-chr1:86154269..86156187,2	MCF-7	breast:
2	chr1:86046490..86052181-chr1:86153083..86160889,7	MCF-7	breast:

Variant related genes	Relation type
ENSG00000142871	Chromatin interaction

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs55863151	1.00[AMR][1000 genomes]
rs56276114	0.83[AMR][1000 genomes]
rs56884931	1.00[AMR][1000 genomes]
rs57768694	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60184734	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61168883	0.95[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs61328391	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6699712	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72944688	1.00[AMR][1000 genomes]
rs72944702	1.00[AMR][1000 genomes]
rs74097059	1.00[AMR][1000 genomes]
rs74097060	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74097061	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74097066	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74097067	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74097079	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74097081	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74097082	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74097084	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74097085	1.00[AMR][1000 genomes]
rs7530774	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7538740	0.85[AMR][1000 genomes]
rs7541996	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1006994	chr1:85454304-86327679	Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	72 gene(s)	inside rSNPs	diseases
2	esv3391173	chr1:86005637-86337469	Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Weak transcription Transcr. at gene 5' and 3' Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
3	nsv817212	chr1:86127851-86658426	Enhancers Weak transcription Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	nsv871471	chr1:86143084-86211516	Flanking Active TSS Strong transcription Enhancers Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:117 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:86103400-86173000	Weak transcription	Pancreas	Pancrea
2	chr1:86103600-86157400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr1:86103600-86172600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr1:86103600-86172600	Weak transcription	Gastric	stomach
5	chr1:86114400-86163200	Weak transcription	Esophagus	oesophagus
6	chr1:86115200-86167600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
7	chr1:86117000-86165800	Weak transcription	Fetal Brain Female	brain
8	chr1:86117600-86172000	Weak transcription	Small Intestine	intestine
9	chr1:86119600-86157800	Weak transcription	Hela-S3	cervix
10	chr1:86119600-86172000	Weak transcription	Colonic Mucosa	Colon
11	chr1:86119800-86171800	Weak transcription	Fetal Brain Male	brain
12	chr1:86132800-86165800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
13	chr1:86133600-86163400	Weak transcription	Fetal Heart	heart
14	chr1:86134200-86172600	Weak transcription	Right Ventricle	heart
15	chr1:86134600-86172400	Weak transcription	Stomach Mucosa	stomach
16	chr1:86135200-86171200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
17	chr1:86135600-86172000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
18	chr1:86141200-86158000	Weak transcription	HSMMtube	muscle
19	chr1:86141600-86171800	Weak transcription	Rectal Smooth Muscle	rectum
20	chr1:86142400-86170600	Weak transcription	Brain Germinal Matrix	brain
21	chr1:86142600-86157000	Weak transcription	Duodenum Mucosa	Duodenum
22	chr1:86142600-86157200	Weak transcription	Sigmoid Colon	Sigmoid Colon
23	chr1:86142600-86157800	Weak transcription	Stomach Smooth Muscle	stomach
24	chr1:86142600-86163800	Weak transcription	Skeletal Muscle Male	skeletal muscle
25	chr1:86142600-86166200	Weak transcription	H1 Cell Line	embryonic stem cell
26	chr1:86142600-86166400	Weak transcription	Lung	lung
27	chr1:86142600-86170800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr1:86142600-86171000	Weak transcription	Brain Substantia Nigra	brain
29	chr1:86142600-86172600	Weak transcription	Thymus	Thymus
30	chr1:86142600-86172600	Weak transcription	Spleen	Spleen
31	chr1:86142800-86166400	Weak transcription	Placenta	Placenta
32	chr1:86143000-86157800	Weak transcription	NHLF	lung
33	chr1:86144000-86156200	Weak transcription	Fetal Thymus	thymus
34	chr1:86144000-86157400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
35	chr1:86144200-86158000	Weak transcription	A549	lung
36	chr1:86144200-86163600	Weak transcription	Skeletal Muscle Female	skeletal muscle
37	chr1:86144200-86165000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
38	chr1:86144200-86166200	Weak transcription	Duodenum Smooth Muscle	Duodenum
39	chr1:86144200-86166800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
40	chr1:86144200-86168200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
41	chr1:86144400-86157200	Weak transcription	HUES6 Cell Line	embryonic stem cell
42	chr1:86144400-86158200	Weak transcription	NH-A	brain
43	chr1:86144400-86165800	Weak transcription	K562	blood
44	chr1:86144400-86167600	Weak transcription	Fetal Lung	lung
45	chr1:86144400-86170400	Weak transcription	Brain Hippocampus Middle	brain
46	chr1:86145000-86157000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
47	chr1:86145800-86165400	Weak transcription	Rectal Mucosa Donor 29	rectum
48	chr1:86146000-86156200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
49	chr1:86146000-86156200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
50	chr1:86146000-86157400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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