Variant report

Variant	rs74098822
Chromosome Location	chr12:63150542-63150543
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs12301205	0.84[AFR][1000 genomes]
rs58310965	1.00[AFR][1000 genomes]
rs74098821	0.92[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1802580	chr12:63139188-63157591	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
2	nsv559157	chr12:63142592-63163019	Enhancers Genic enhancers Weak transcription Strong transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
3	nsv975503	chr12:63148884-63150580	Weak transcription ZNF genes & repeats Strong transcription Enhancers	TF binding region	1 gene(s)	inside rSNPs	diseases
4	nsv899160	chr12:63149213-63209623	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:41 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:63096600-63157000	Weak transcription	Pancreas	Pancrea
2	chr12:63123000-63152000	Weak transcription	Gastric	stomach
3	chr12:63126200-63155600	Weak transcription	Aorta	Aorta
4	chr12:63130200-63153200	Weak transcription	Fetal Intestine Large	intestine
5	chr12:63134200-63150600	Weak transcription	Right Atrium	heart
6	chr12:63134400-63160600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
7	chr12:63140000-63150800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr12:63140000-63168600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
9	chr12:63143400-63153200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr12:63143800-63155600	Weak transcription	Psoas Muscle	Psoas
11	chr12:63145000-63151600	Weak transcription	Fetal Kidney	kidney
12	chr12:63145200-63150800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr12:63145400-63151200	Strong transcription	HepG2	liver
14	chr12:63145400-63160600	Weak transcription	Brain Inferior Temporal Lobe	brain
15	chr12:63145600-63152200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
16	chr12:63145800-63150600	Weak transcription	Brain Angular Gyrus	brain
17	chr12:63145800-63151200	Weak transcription	Brain Cingulate Gyrus	brain
18	chr12:63145800-63151600	Weak transcription	Brain Hippocampus Middle	brain
19	chr12:63145800-63152000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
20	chr12:63145800-63152200	Weak transcription	H1 Cell Line	embryonic stem cell
21	chr12:63145800-63153000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
22	chr12:63145800-63154000	Weak transcription	Duodenum Mucosa	Duodenum
23	chr12:63145800-63154600	Weak transcription	Rectal Mucosa Donor 29	rectum
24	chr12:63145800-63155400	Weak transcription	Sigmoid Colon	Sigmoid Colon
25	chr12:63145800-63160600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
26	chr12:63145800-63160800	Weak transcription	Brain Substantia Nigra	brain
27	chr12:63145800-63163400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
28	chr12:63145800-63169400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
29	chr12:63147000-63150800	Weak transcription	A549	lung
30	chr12:63147800-63150600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
31	chr12:63149000-63155600	Weak transcription	Fetal Muscle Trunk	muscle
32	chr12:63149400-63150800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
33	chr12:63149400-63152000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
34	chr12:63149800-63152200	Weak transcription	HUES6 Cell Line	embryonic stem cell
35	chr12:63149800-63154400	Weak transcription	Fetal Stomach	stomach
36	chr12:63149800-63158400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
37	chr12:63150000-63150800	Enhancers	Lung	lung
38	chr12:63150000-63151000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
39	chr12:63150000-63153400	Weak transcription	Fetal Intestine Small	intestine
40	chr12:63150000-63179800	Weak transcription	Primary hematopoietic stem cells	blood
41	chr12:63150400-63150800	Enhancers	Left Ventricle	heart

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