Variant report

Variant	rs74098855
Chromosome Location	chr1:85956305-85956306
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:85953877..85956471-chr1:85959863..85962113,2	K562	blood:
2	chr1:85955967..85957710-chr1:85959774..85962118,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000153904	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs13375203	1.00[AMR][1000 genomes]
rs58296042	1.00[AMR][1000 genomes]
rs74097076	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1006994	chr1:85454304-86327679	Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	72 gene(s)	inside rSNPs	diseases
2	nsv830470	chr1:85820775-86014080	Enhancers Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:85931800-85960000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr1:85932000-85961400	Weak transcription	Fetal Stomach	stomach
3	chr1:85940200-85956400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr1:85942600-85956800	Weak transcription	Aorta	Aorta
5	chr1:85943000-85956600	Weak transcription	NHLF	lung
6	chr1:85946000-85956800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr1:85950400-85960000	Weak transcription	Adipose Nuclei	Adipose
8	chr1:85950800-85957000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr1:85950800-85960400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr1:85951000-85956400	Weak transcription	HUVEC	blood vessel
11	chr1:85951400-85960200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr1:85951600-85959600	Strong transcription	HSMM	muscle
13	chr1:85951800-85960200	Strong transcription	NH-A	brain
14	chr1:85953000-85956800	Weak transcription	NHDF-Ad	bronchial
15	chr1:85953000-85960000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr1:85953200-85960400	Strong transcription	Osteobl	bone
17	chr1:85953400-85960000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
18	chr1:85954000-85959400	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr1:85955400-85956800	Weak transcription	Muscle Satellite Cultured Cells	--
20	chr1:85955400-85960200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
21	chr1:85955800-85956400	Enhancers	HepG2	liver
22	chr1:85955800-85956600	Enhancers	Liver	Liver
23	chr1:85955800-85958800	Weak transcription	Stomach Smooth Muscle	stomach
24	chr1:85956000-85956400	Enhancers	Primary hematopoietic stem cells short term culture	blood
25	chr1:85956000-85956400	Genic enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
26	chr1:85956000-85956400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
27	chr1:85956000-85957400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
28	chr1:85956200-85956600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
29	chr1:85956200-85957400	Strong transcription	HSMMtube	muscle

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