Variant report

Variant	rs74101322
Chromosome Location	chr1:93166598-93166599
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10158801	0.82[EUR][1000 genomes]
rs10159031	0.87[AMR][1000 genomes]
rs10465755	0.87[AMR][1000 genomes]
rs10465757	1.00[EUR][1000 genomes]
rs12564537	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12564911	0.87[AMR][1000 genomes]
rs12565227	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12565259	0.87[AMR][1000 genomes]
rs12565764	0.87[ASN][1000 genomes]
rs17131655	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2151575	0.87[AMR][1000 genomes]
rs28550182	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs41286813	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4130290	0.89[EUR][1000 genomes]
rs4442373	0.89[EUR][1000 genomes]
rs55995837	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56185219	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56695578	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56764656	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs59552478	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs59925050	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60842823	0.89[EUR][1000 genomes]
rs60855457	0.84[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs61259042	0.89[EUR][1000 genomes]
rs61288876	0.87[AMR][1000 genomes]
rs6699723	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74101199	0.87[AMR][1000 genomes]
rs74101310	0.89[EUR][1000 genomes]
rs74101354	0.89[EUR][1000 genomes]
rs74101356	0.89[EUR][1000 genomes]
rs74101362	0.89[EUR][1000 genomes]
rs74101363	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74102921	0.81[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs74102923	0.81[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs7535171	0.82[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs7535486	0.89[EUR][1000 genomes]
rs7548287	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs969698	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9803725	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830603	chr1:93003657-93172206	Weak transcription Strong transcription ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	esv1794348	chr1:93090476-93192932	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	esv1802611	chr1:93090476-93219907	Active TSS Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:65 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:93098400-93205400	Weak transcription	NHLF	lung
2	chr1:93120000-93171400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr1:93122800-93169400	Weak transcription	Brain Cingulate Gyrus	brain
4	chr1:93123400-93176200	Weak transcription	Psoas Muscle	Psoas
5	chr1:93123600-93166800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr1:93123600-93178800	Weak transcription	Aorta	Aorta
7	chr1:93123600-93213400	Weak transcription	Gastric	stomach
8	chr1:93142400-93171000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr1:93146600-93175600	Weak transcription	NHEK	skin
10	chr1:93148000-93166800	Weak transcription	K562	blood
11	chr1:93148600-93171000	Weak transcription	Hela-S3	cervix
12	chr1:93152600-93167000	Weak transcription	Primary T cells from cord blood	blood
13	chr1:93153400-93170200	Strong transcription	Monocytes-CD14+_RO01746	blood
14	chr1:93154000-93167600	Strong transcription	Primary monocytes fromperipheralblood	blood
15	chr1:93155800-93213400	Weak transcription	Lung	lung
16	chr1:93156200-93172800	Weak transcription	HepG2	liver
17	chr1:93156200-93174000	Weak transcription	A549	lung
18	chr1:93156800-93170800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
19	chr1:93157800-93171000	Weak transcription	Stomach Mucosa	stomach
20	chr1:93157800-93175600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
21	chr1:93158200-93169400	Weak transcription	Primary hematopoietic stem cells	blood
22	chr1:93159000-93174800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
23	chr1:93160800-93166800	Weak transcription	Osteobl	bone
24	chr1:93160800-93170600	Weak transcription	HUES48 Cell Line	embryonic stem cell
25	chr1:93160800-93171000	Weak transcription	NH-A	brain
26	chr1:93160800-93174000	Weak transcription	Brain Angular Gyrus	brain
27	chr1:93160800-93175200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
28	chr1:93160800-93175200	Weak transcription	HUES6 Cell Line	embryonic stem cell
29	chr1:93160800-93175200	Weak transcription	HSMM	muscle
30	chr1:93160800-93177000	Weak transcription	Ovary	ovary
31	chr1:93161000-93166600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
32	chr1:93161000-93167000	Weak transcription	Skeletal Muscle Female	skeletal muscle
33	chr1:93161000-93167400	Weak transcription	Duodenum Mucosa	Duodenum
34	chr1:93161000-93167600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
35	chr1:93161000-93168200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
36	chr1:93161000-93168400	Weak transcription	HMEC	breast
37	chr1:93161000-93168600	Weak transcription	Primary B cells from peripheral blood	blood
38	chr1:93161000-93170600	Weak transcription	Stomach Smooth Muscle	stomach
39	chr1:93161000-93170800	Weak transcription	HUES64 Cell Line	embryonic stem cell
40	chr1:93161000-93170800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
41	chr1:93161000-93171000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
42	chr1:93161000-93171000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
43	chr1:93161000-93171000	Weak transcription	Duodenum Smooth Muscle	Duodenum
44	chr1:93161000-93171000	Weak transcription	Right Ventricle	heart
45	chr1:93161000-93171200	Weak transcription	Rectal Mucosa Donor 29	rectum
46	chr1:93161000-93175200	Weak transcription	Muscle Satellite Cultured Cells	--
47	chr1:93161000-93175600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
48	chr1:93161000-93176800	Weak transcription	Colon Smooth Muscle	Colon
49	chr1:93161000-93197400	Weak transcription	Primary B cells from cord blood	blood
50	chr1:93161000-93197800	Weak transcription	Sigmoid Colon	Sigmoid Colon

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links