Variant report

Variant	rs74101669
Chromosome Location	chr1:94152538-94152539
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:94151003..94153408-chr1:94159847..94162420,2	MCF-7	breast:
2	chr1:94146482..94150220-chr1:94152045..94154250,3	MCF-7	breast:
3	chr1:94150767..94155477-chr1:94157317..94159691,6	MCF-7	breast:

Variant related genes	Relation type
ENSG00000137936	Chromatin interaction

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs13373766	1.00[EUR][1000 genomes]
rs17109954	1.00[EUR][1000 genomes]
rs17110016	1.00[EUR][1000 genomes]
rs35555794	1.00[EUR][1000 genomes]
rs55670441	1.00[EUR][1000 genomes]
rs55742446	1.00[EUR][1000 genomes]
rs57291093	1.00[EUR][1000 genomes]
rs58351576	1.00[EUR][1000 genomes]
rs59250599	1.00[EUR][1000 genomes]
rs60032869	1.00[EUR][1000 genomes]
rs60046384	1.00[EUR][1000 genomes]
rs60383814	1.00[EUR][1000 genomes]
rs61215181	1.00[EUR][1000 genomes]
rs6664053	1.00[EUR][1000 genomes]
rs6682265	1.00[EUR][1000 genomes]
rs6687167	1.00[EUR][1000 genomes]
rs74101588	1.00[EUR][1000 genomes]
rs74101589	1.00[EUR][1000 genomes]
rs74101603	1.00[EUR][1000 genomes]
rs74101663	1.00[EUR][1000 genomes]
rs74101667	1.00[EUR][1000 genomes]
rs74101670	1.00[EUR][1000 genomes]
rs74104033	1.00[EUR][1000 genomes]
rs7525388	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv482370	chr1:94000799-94183692	Enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	esv2755338	chr1:94059579-94176079	Weak transcription Flanking Active TSS Enhancers Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:94147800-94153200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr1:94148200-94154600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr1:94148200-94154600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr1:94148200-94155200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr1:94148200-94156800	Weak transcription	Adipose Nuclei	Adipose
6	chr1:94148200-94156800	Weak transcription	NHLF	lung
7	chr1:94148200-94167200	Weak transcription	Right Atrium	heart
8	chr1:94148400-94156200	Weak transcription	HSMM	muscle
9	chr1:94148400-94156600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
10	chr1:94148400-94156800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr1:94148800-94156400	Weak transcription	HMEC	breast
12	chr1:94150400-94156000	Enhancers	Primary B cells from peripheral blood	blood
13	chr1:94150800-94152600	Enhancers	Primary B cells from cord blood	blood
14	chr1:94151200-94153600	Enhancers	Hela-S3	cervix
15	chr1:94151800-94152600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
16	chr1:94151800-94152600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr1:94151800-94152600	Enhancers	A549	lung
18	chr1:94151800-94152800	Enhancers	HepG2	liver
19	chr1:94152000-94152600	Enhancers	HUES6 Cell Line	embryonic stem cell
20	chr1:94152000-94152600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr1:94152000-94152600	Flanking Active TSS	Duodenum Mucosa	Duodenum
22	chr1:94152000-94152600	Enhancers	GM12878-XiMat	blood
23	chr1:94152200-94152600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
24	chr1:94152200-94152600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
25	chr1:94152200-94152600	Enhancers	HUVEC	blood vessel
26	chr1:94152200-94152800	Enhancers	NHEK	skin
27	chr1:94152200-94154600	Weak transcription	H9 Cell Line	embryonic stem cell
28	chr1:94152200-94155200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
29	chr1:94152200-94155400	Weak transcription	Placenta	Placenta
30	chr1:94152200-94159000	Enhancers	Fetal Intestine Small	intestine
31	chr1:94152400-94155200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
32	chr1:94152400-94155200	Weak transcription	Fetal Intestine Large	intestine
33	chr1:94152400-94157200	Weak transcription	Small Intestine	intestine

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