Variant report
| Variant | rs74102018 |
|---|---|
| Chromosome Location | chr1:94421944-94421945 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr1:94405857..94407993-chr1:94421477..94424032,2 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:23)
| rs_ID | r2[population] |
|---|---|
| rs1159834 | 0.90[AMR][1000 genomes];0.94[ASN][1000 genomes] |
| rs11804053 | 1.00[EUR][1000 genomes] |
| rs11804187 | 1.00[EUR][1000 genomes] |
| rs11807845 | 1.00[EUR][1000 genomes] |
| rs12407172 | 0.90[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs17110878 | 1.00[EUR][1000 genomes] |
| rs17110898 | 1.00[EUR][1000 genomes] |
| rs17878956 | 1.00[EUR][1000 genomes] |
| rs17881957 | 1.00[EUR][1000 genomes] |
| rs17884580 | 1.00[EUR][1000 genomes] |
| rs17884925 | 1.00[EUR][1000 genomes] |
| rs17885147 | 1.00[EUR][1000 genomes] |
| rs34212520 | 1.00[EUR][1000 genomes] |
| rs56260099 | 1.00[EUR][1000 genomes] |
| rs60759501 | 1.00[EUR][1000 genomes] |
| rs61597540 | 0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs6677399 | 1.00[EUR][1000 genomes] |
| rs6698242 | 1.00[EUR][1000 genomes] |
| rs714096 | 0.90[AMR][1000 genomes] |
| rs74102090 | 1.00[EUR][1000 genomes] |
| rs7530845 | 0.90[AMR][1000 genomes];0.81[ASN][1000 genomes] |
| rs7535837 | 1.00[EUR][1000 genomes] |
| rs7550770 | 0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv516137 | chr1:94404238-94504545 | Weak transcription Enhancers Genic enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr1:94421200-94422200 | ZNF genes & repeats | Breast variant Human Mammary Epithelial Cells (vHMEC) | Breast |
