Variant report

Variant	rs74102090
Chromosome Location	chr1:94496795-94496796
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:94495358..94496904-chr1:94499895..94502306,2	MCF-7	breast:

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs11804053	1.00[EUR][1000 genomes]
rs17110878	1.00[EUR][1000 genomes]
rs17110898	1.00[EUR][1000 genomes]
rs17878956	1.00[EUR][1000 genomes]
rs17881957	1.00[EUR][1000 genomes]
rs17884580	1.00[EUR][1000 genomes]
rs17884925	1.00[EUR][1000 genomes]
rs17885147	1.00[EUR][1000 genomes]
rs34212520	1.00[EUR][1000 genomes]
rs56260099	1.00[EUR][1000 genomes]
rs60759501	1.00[EUR][1000 genomes]
rs61597540	1.00[EUR][1000 genomes]
rs6677399	1.00[EUR][1000 genomes]
rs74102018	1.00[EUR][1000 genomes]
rs7535837	1.00[EUR][1000 genomes]
rs7550770	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv516137	chr1:94404238-94504545	Weak transcription Enhancers Genic enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:94488200-94505000	Weak transcription	Spleen	Spleen
2	chr1:94488600-94502600	Weak transcription	Right Atrium	heart
3	chr1:94491400-94499000	Enhancers	HepG2	liver
4	chr1:94492200-94497200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr1:94492200-94510000	Weak transcription	Aorta	Aorta
6	chr1:94492800-94498600	Weak transcription	GM12878-XiMat	blood
7	chr1:94493000-94497200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr1:94496000-94497000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
9	chr1:94496000-94500800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
10	chr1:94496200-94497400	Enhancers	Breast Myoepithelial Primary Cells	Breast
11	chr1:94496400-94496800	Enhancers	Brain Hippocampus Middle	brain
12	chr1:94496400-94497400	Enhancers	Brain Inferior Temporal Lobe	brain
13	chr1:94496600-94496800	Enhancers	Gastric	stomach
14	chr1:94496600-94497000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr1:94496600-94497200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr1:94496600-94497200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
17	chr1:94496600-94497400	Enhancers	Brain Cingulate Gyrus	brain
18	chr1:94496600-94497400	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
19	chr1:94496600-94497400	Enhancers	Brain Substantia Nigra	brain
20	chr1:94496600-94497600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
21	chr1:94496600-94497600	Enhancers	Lung	lung

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