Variant report

Variant	rs74103206
Chromosome Location	chr13:87830626-87830627
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs10444617	0.83[AFR][1000 genomes]
rs10444618	0.83[AFR][1000 genomes]
rs10444619	0.83[AFR][1000 genomes]
rs11618967	0.87[EUR][1000 genomes]
rs16951130	0.87[EUR][1000 genomes]
rs16951137	0.87[EUR][1000 genomes]
rs4476033	0.85[AFR][1000 genomes]
rs55756093	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs56198489	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs56204352	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs56723125	0.87[EUR][1000 genomes]
rs57386857	0.96[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs58594104	0.87[EUR][1000 genomes]
rs58658894	0.87[EUR][1000 genomes]
rs58716013	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs59760565	0.87[EUR][1000 genomes]
rs59946799	0.80[AFR][1000 genomes]
rs60032361	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs60048216	0.87[EUR][1000 genomes]
rs60617913	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs60680591	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs60842880	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs73560623	0.87[EUR][1000 genomes]
rs73565478	0.87[EUR][1000 genomes]
rs73566067	0.87[EUR][1000 genomes]
rs73567603	0.87[EUR][1000 genomes]
rs74103203	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs74103209	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs74103210	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs74103211	0.92[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs74103212	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs74103272	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs74103275	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs74103295	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs74103296	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs74103302	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs74105916	0.85[AFR][1000 genomes]
rs74105922	0.82[AFR][1000 genomes]
rs74105943	0.83[AFR][1000 genomes]
rs74105957	0.92[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs74105959	0.91[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs9302046	0.83[AFR][1000 genomes]
rs9516522	0.82[AFR][1000 genomes]
rs9516523	0.82[AFR][1000 genomes]
rs9516525	0.82[AFR][1000 genomes]
rs9524783	0.84[AFR][1000 genomes]
rs9524793	0.82[AFR][1000 genomes]
rs9524798	0.80[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv562621	chr13:87192747-87927450	Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1045687	chr13:87822969-88114685	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv541860	chr13:87822969-88114685	Enhancers ZNF genes & repeats Weak transcription Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	esv3351770	chr13:87824000-87847009	Active TSS ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS	lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:87829800-87834400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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