Variant report

Variant	rs74103207
Chromosome Location	chr13:87831165-87831166
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs55672132	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56062757	1.00[AMR][1000 genomes]
rs58044864	0.90[AFR][1000 genomes]
rs59690989	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59949878	0.90[AFR][1000 genomes]
rs60144006	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73558883	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73561055	1.00[AMR][1000 genomes]
rs73562444	0.90[AFR][1000 genomes]
rs73562449	0.90[AFR][1000 genomes]
rs73562451	0.90[AFR][1000 genomes]
rs74102211	1.00[AMR][1000 genomes]
rs74103288	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74103297	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74103320	1.00[AMR][1000 genomes]
rs74103381	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74103431	1.00[AMR][1000 genomes]
rs74103433	1.00[AMR][1000 genomes]
rs74103695	1.00[AMR][1000 genomes]
rs74104820	1.00[AMR][1000 genomes]
rs74104839	1.00[AMR][1000 genomes]
rs74104840	1.00[AMR][1000 genomes]
rs74105309	1.00[AMR][1000 genomes]
rs74105624	0.90[AFR][1000 genomes]
rs74105918	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74105932	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv562621	chr13:87192747-87927450	Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1045687	chr13:87822969-88114685	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv541860	chr13:87822969-88114685	Enhancers ZNF genes & repeats Weak transcription Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	esv3351770	chr13:87824000-87847009	Active TSS ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS	lncRNA	n/a	inside rSNPs	diseases
5	esv3514530	chr13:87831150-87838246	Weak transcription Enhancers ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:87829800-87834400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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