Variant report

Variant	rs74103433
Chromosome Location	chr13:87691435-87691436
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:87685458..87688112-chr13:87691152..87694423,3	K562	blood:

Extended variants
information (count: 87 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:80)

rs_ID	r²[population]
rs55668499	1.00[AMR][1000 genomes]
rs55672132	1.00[AMR][1000 genomes]
rs55723559	1.00[AMR][1000 genomes]
rs55810011	1.00[AMR][1000 genomes]
rs55920859	1.00[AMR][1000 genomes]
rs55923208	1.00[AMR][1000 genomes]
rs56062757	1.00[AMR][1000 genomes]
rs56195576	1.00[AMR][1000 genomes]
rs56198189	1.00[AMR][1000 genomes]
rs56826386	1.00[AMR][1000 genomes]
rs57925385	1.00[AMR][1000 genomes]
rs58190757	1.00[AMR][1000 genomes]
rs58393016	1.00[AMR][1000 genomes]
rs59003153	1.00[AMR][1000 genomes]
rs59375365	1.00[AMR][1000 genomes]
rs59641360	1.00[AMR][1000 genomes]
rs59690989	1.00[AMR][1000 genomes]
rs59812988	1.00[AMR][1000 genomes]
rs60144006	1.00[AMR][1000 genomes]
rs60879751	1.00[AMR][1000 genomes]
rs61242827	1.00[AMR][1000 genomes]
rs61303386	1.00[AMR][1000 genomes]
rs73558883	1.00[AMR][1000 genomes]
rs73561055	1.00[AMR][1000 genomes]
rs74101974	1.00[AMR][1000 genomes]
rs74101976	1.00[AMR][1000 genomes]
rs74101978	1.00[AMR][1000 genomes]
rs74101982	1.00[AMR][1000 genomes]
rs74101986	1.00[AMR][1000 genomes]
rs74101990	1.00[AMR][1000 genomes]
rs74101992	1.00[AMR][1000 genomes]
rs74101994	1.00[AMR][1000 genomes]
rs74101997	1.00[AMR][1000 genomes]
rs74102001	1.00[AMR][1000 genomes]
rs74102211	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74103207	1.00[AMR][1000 genomes]
rs74103288	1.00[AMR][1000 genomes]
rs74103297	1.00[AMR][1000 genomes]
rs74103320	1.00[AMR][1000 genomes]
rs74103381	1.00[AMR][1000 genomes]
rs74103431	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74103603	1.00[AMR][1000 genomes]
rs74103605	1.00[AMR][1000 genomes]
rs74103612	1.00[AMR][1000 genomes]
rs74103613	1.00[AMR][1000 genomes]
rs74103615	1.00[AMR][1000 genomes]
rs74103617	1.00[AMR][1000 genomes]
rs74103619	1.00[AMR][1000 genomes]
rs74103621	1.00[AMR][1000 genomes]
rs74103622	1.00[AMR][1000 genomes]
rs74103623	1.00[AMR][1000 genomes]
rs74103624	1.00[AMR][1000 genomes]
rs74103625	1.00[AMR][1000 genomes]
rs74103626	1.00[AMR][1000 genomes]
rs74103630	1.00[AMR][1000 genomes]
rs74103631	1.00[AMR][1000 genomes]
rs74103632	1.00[AMR][1000 genomes]
rs74103635	1.00[AMR][1000 genomes]
rs74103636	1.00[AMR][1000 genomes]
rs74103640	1.00[AMR][1000 genomes]
rs74103652	1.00[AMR][1000 genomes]
rs74103653	1.00[AMR][1000 genomes]
rs74103655	1.00[AMR][1000 genomes]
rs74103656	1.00[AMR][1000 genomes]
rs74103658	1.00[AMR][1000 genomes]
rs74103660	1.00[AMR][1000 genomes]
rs74103667	1.00[AMR][1000 genomes]
rs74103668	1.00[AMR][1000 genomes]
rs74103670	1.00[AMR][1000 genomes]
rs74103671	1.00[AMR][1000 genomes]
rs74103672	1.00[AMR][1000 genomes]
rs74103673	1.00[AMR][1000 genomes]
rs74103690	1.00[AMR][1000 genomes]
rs74103695	1.00[AMR][1000 genomes]
rs74104820	1.00[AMR][1000 genomes]
rs74104839	1.00[AMR][1000 genomes]
rs74104840	1.00[AMR][1000 genomes]
rs74105309	1.00[AMR][1000 genomes]
rs74105918	1.00[AMR][1000 genomes]
rs74105932	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv562621	chr13:87192747-87927450	Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	esv3439251	chr13:87398732-87699077	Weak transcription Enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv1046278	chr13:87461244-87712231	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv1044991	chr13:87461244-87713936	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv832671	chr13:87539345-87707707	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv428607	chr13:87633567-87766875	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv1048011	chr13:87686985-87823029	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:87690000-87702200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr13:87691200-87691600	Active TSS	Primary T helper 17 cells PMA-I stimulated	--

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links