Variant report

Variant	rs74104820
Chromosome Location	chr13:87732636-87732637
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 80 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:77)

rs_ID	r²[population]
rs55668499	1.00[AMR][1000 genomes]
rs55672132	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55723559	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55810011	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55920859	1.00[AMR][1000 genomes]
rs55923208	1.00[AMR][1000 genomes]
rs56062757	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56195576	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56198189	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56826386	1.00[AMR][1000 genomes]
rs57925385	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58190757	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58393016	1.00[AMR][1000 genomes]
rs59003153	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59375365	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59641360	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59690989	1.00[AMR][1000 genomes]
rs59812988	1.00[AMR][1000 genomes]
rs60144006	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60879751	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61242827	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61303386	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73558883	1.00[AMR][1000 genomes]
rs73561054	0.93[AFR][1000 genomes]
rs73561055	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74101990	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74101992	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74101994	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74101997	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74102001	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74102211	1.00[AMR][1000 genomes]
rs74103207	1.00[AMR][1000 genomes]
rs74103288	1.00[AMR][1000 genomes]
rs74103297	1.00[AMR][1000 genomes]
rs74103320	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74103381	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74103431	1.00[AMR][1000 genomes]
rs74103433	1.00[AMR][1000 genomes]
rs74103603	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74103605	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74103612	1.00[AMR][1000 genomes]
rs74103613	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74103615	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74103616	0.81[AFR][1000 genomes]
rs74103617	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74103619	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74103621	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74103622	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74103623	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74103624	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74103625	1.00[AMR][1000 genomes]
rs74103626	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74103630	1.00[AMR][1000 genomes]
rs74103631	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74103632	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74103635	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74103636	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74103640	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74103652	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74103653	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74103655	1.00[AMR][1000 genomes]
rs74103656	1.00[AMR][1000 genomes]
rs74103658	1.00[AMR][1000 genomes]
rs74103660	1.00[AMR][1000 genomes]
rs74103667	1.00[AMR][1000 genomes]
rs74103668	1.00[AMR][1000 genomes]
rs74103670	1.00[AMR][1000 genomes]
rs74103671	1.00[AMR][1000 genomes]
rs74103672	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74103673	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74103690	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74103695	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74104839	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74104840	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74105309	1.00[AMR][1000 genomes]
rs74105918	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74105932	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv562621	chr13:87192747-87927450	Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv428607	chr13:87633567-87766875	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv1048011	chr13:87686985-87823029	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:87732400-87732800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr13:87732400-87733000	Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr13:87732600-87733000	ZNF genes & repeats	Gastric	stomach

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