Variant report

Variant	rs74106020
Chromosome Location	chr13:96323072-96323073
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:96320722..96323080-chr13:96327579..96329585,2	MCF-7	breast:
2	chr13:96321544..96324613-chr13:96328623..96330410,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000247400	Chromatin interaction
ENSG00000102580	Chromatin interaction

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs16951257	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17882446	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17885605	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2389266	1.00[EUR][1000 genomes]
rs34303958	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4394949	1.00[EUR][1000 genomes]
rs55649836	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55671956	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55858348	1.00[EUR][1000 genomes]
rs56397503	1.00[EUR][1000 genomes]
rs58386476	1.00[EUR][1000 genomes]
rs59863382	1.00[AMR][1000 genomes]
rs60689318	0.84[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs61645359	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7323853	1.00[EUR][1000 genomes]
rs74106032	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74106197	1.00[EUR][1000 genomes]
rs74106202	1.00[EUR][1000 genomes]
rs74109004	1.00[EUR][1000 genomes]
rs74109005	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74109006	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74109007	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74109010	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74109011	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74109012	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74109013	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74109014	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74109015	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74109016	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74109017	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74109018	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74109019	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74109020	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74109021	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74109022	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7984248	1.00[EUR][1000 genomes]
rs7990355	1.00[EUR][1000 genomes]
rs9671129	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv900934	chr13:96255706-96327574	Strong transcription Flanking Active TSS Bivalent/Poised TSS Enhancers Weak transcription Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:96317400-96327000	ZNF genes & repeats	Liver	Liver
2	chr13:96322800-96323400	ZNF genes & repeats	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr13:96322800-96326200	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr13:96323000-96323400	ZNF genes & repeats	Brain Inferior Temporal Lobe	brain
5	chr13:96323000-96324400	ZNF genes & repeats	Aorta	Aorta
6	chr13:96323000-96324600	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
7	chr13:96323000-96328400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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