Variant report

Variant	rs74106194
Chromosome Location	chr13:96182062-96182063
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs58692855	1.00[EUR][1000 genomes]
rs59939959	1.00[EUR][1000 genomes]
rs61487855	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv900933	chr13:96138087-96215289	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Active TSS Weak transcription Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv525760	chr13:96176034-96186575	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:96176200-96182400	Weak transcription	Pancreas	Pancrea
2	chr13:96177000-96182200	Weak transcription	Hela-S3	cervix
3	chr13:96177000-96182200	Weak transcription	HMEC	breast
4	chr13:96177000-96182400	Weak transcription	Monocytes-CD14+_RO01746	blood
5	chr13:96181200-96185800	Weak transcription	Cortex derived primary cultured neurospheres	brain
6	chr13:96181600-96183000	Enhancers	Primary hematopoietic stem cells	blood
7	chr13:96181600-96183000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr13:96181800-96183000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr13:96181800-96183000	Enhancers	Primary hematopoietic stem cells short term culture	blood
10	chr13:96181800-96183000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr13:96181800-96183200	Enhancers	HUVEC	blood vessel
12	chr13:96182000-96182400	Bivalent Enhancer	Osteobl	bone
13	chr13:96182000-96182600	Enhancers	NH-A	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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