Variant report

Variant	rs74109005
Chromosome Location	chr13:96233357-96233358
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:96227070..96229624-chr13:96232752..96234475,2	MCF-7	breast:

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs16951257	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17882446	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17885605	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2389266	1.00[EUR][1000 genomes]
rs34303958	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4394949	1.00[EUR][1000 genomes]
rs55649836	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55671956	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56397503	1.00[EUR][1000 genomes]
rs58386476	0.95[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs60689318	1.00[EUR][1000 genomes]
rs61645359	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7323853	1.00[EUR][1000 genomes]
rs74106020	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74106032	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74106197	1.00[EUR][1000 genomes]
rs74106202	1.00[EUR][1000 genomes]
rs74109004	1.00[EUR][1000 genomes]
rs74109006	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74109007	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74109008	0.85[AFR][1000 genomes]
rs74109009	0.92[AFR][1000 genomes]
rs74109010	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74109011	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74109012	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74109013	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74109014	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74109015	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74109016	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74109017	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74109018	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74109019	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74109020	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74109021	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74109022	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7984248	1.00[EUR][1000 genomes]
rs7990355	1.00[EUR][1000 genomes]
rs9671129	1.00[EUR][1000 genomes]

No data

Chromatin state (count:83 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:96223000-96239400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr13:96223800-96234400	Weak transcription	Brain Cingulate Gyrus	brain
3	chr13:96224200-96254200	Weak transcription	Brain Hippocampus Middle	brain
4	chr13:96224400-96239200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chr13:96224400-96248000	Weak transcription	Esophagus	oesophagus
6	chr13:96225200-96234200	Weak transcription	Brain Anterior Caudate	brain
7	chr13:96225600-96233800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr13:96225800-96239200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr13:96227000-96239400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr13:96227200-96246400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr13:96227400-96234600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
12	chr13:96227600-96246000	Strong transcription	Osteobl	bone
13	chr13:96227800-96246400	Strong transcription	Cortex derived primary cultured neurospheres	brain
14	chr13:96227800-96253600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
15	chr13:96228200-96234400	Weak transcription	Aorta	Aorta
16	chr13:96228200-96246400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr13:96228600-96246200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr13:96228600-96246400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr13:96228600-96246400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
20	chr13:96228600-96246600	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
21	chr13:96228800-96235000	Strong transcription	HSMMtube	muscle
22	chr13:96228800-96243200	Strong transcription	NH-A	brain
23	chr13:96228800-96246600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
24	chr13:96229000-96240200	Strong transcription	Fetal Muscle Leg	muscle
25	chr13:96229000-96243200	Strong transcription	HUES6 Cell Line	embryonic stem cell
26	chr13:96229000-96243200	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
27	chr13:96229000-96256200	Weak transcription	Gastric	stomach
28	chr13:96229200-96233800	Weak transcription	Duodenum Smooth Muscle	Duodenum
29	chr13:96229200-96235400	Strong transcription	Muscle Satellite Cultured Cells	--
30	chr13:96229200-96235800	Strong transcription	HSMM	muscle
31	chr13:96229200-96243200	Strong transcription	iPS-20b Cell Line	embryonic stem cell
32	chr13:96229400-96234400	Weak transcription	Left Ventricle	heart
33	chr13:96229400-96234600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
34	chr13:96229400-96237000	Weak transcription	Colon Smooth Muscle	Colon
35	chr13:96229400-96237200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
36	chr13:96229400-96243400	Strong transcription	iPS-18 Cell Line	embryonic stem cell
37	chr13:96229600-96237000	Weak transcription	Fetal Brain Male	brain
38	chr13:96229600-96237400	Weak transcription	Brain Angular Gyrus	brain
39	chr13:96229600-96253600	Weak transcription	Adipose Nuclei	Adipose
40	chr13:96229600-96256000	Weak transcription	Right Ventricle	heart
41	chr13:96229800-96236000	Strong transcription	H1 Cell Line	embryonic stem cell
42	chr13:96229800-96236200	Strong transcription	HUES48 Cell Line	embryonic stem cell
43	chr13:96229800-96246200	Strong transcription	Fetal Muscle Trunk	muscle
44	chr13:96230000-96237000	Weak transcription	Pancreatic Islets	Pancreatic Islet
45	chr13:96230000-96237800	Weak transcription	Fetal Intestine Large	intestine
46	chr13:96230000-96246400	Strong transcription	HUES64 Cell Line	embryonic stem cell
47	chr13:96230200-96237000	Weak transcription	Brain Inferior Temporal Lobe	brain
48	chr13:96230200-96258200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
49	chr13:96230600-96235400	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
50	chr13:96230600-96237800	Strong transcription	Fetal Brain Female	brain

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