Variant report

Variant	rs74109007
Chromosome Location	chr13:96244936-96244937
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs16951257	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17882446	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17885605	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2389266	1.00[EUR][1000 genomes]
rs34303958	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4394949	1.00[EUR][1000 genomes]
rs55649836	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55671956	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56397503	1.00[EUR][1000 genomes]
rs58386476	0.87[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs60689318	1.00[EUR][1000 genomes]
rs61645359	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7323853	1.00[EUR][1000 genomes]
rs74106020	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74106032	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74106197	1.00[EUR][1000 genomes]
rs74106202	1.00[EUR][1000 genomes]
rs74109004	1.00[EUR][1000 genomes]
rs74109005	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74109006	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74109008	0.83[AFR][1000 genomes]
rs74109009	0.89[AFR][1000 genomes]
rs74109010	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74109011	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74109012	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74109013	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74109014	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74109015	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74109016	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74109017	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74109018	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74109019	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74109020	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74109021	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74109022	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7984248	1.00[EUR][1000 genomes]
rs7990355	1.00[EUR][1000 genomes]
rs9671129	1.00[EUR][1000 genomes]

No data

Chromatin state (count:81 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:96224200-96254200	Weak transcription	Brain Hippocampus Middle	brain
2	chr13:96224400-96248000	Weak transcription	Esophagus	oesophagus
3	chr13:96227200-96246400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr13:96227600-96246000	Strong transcription	Osteobl	bone
5	chr13:96227800-96246400	Strong transcription	Cortex derived primary cultured neurospheres	brain
6	chr13:96227800-96253600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr13:96228200-96246400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr13:96228600-96246200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr13:96228600-96246400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr13:96228600-96246400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr13:96228600-96246600	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
12	chr13:96228800-96246600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr13:96229000-96256200	Weak transcription	Gastric	stomach
14	chr13:96229600-96253600	Weak transcription	Adipose Nuclei	Adipose
15	chr13:96229600-96256000	Weak transcription	Right Ventricle	heart
16	chr13:96229800-96246200	Strong transcription	Fetal Muscle Trunk	muscle
17	chr13:96230000-96246400	Strong transcription	HUES64 Cell Line	embryonic stem cell
18	chr13:96230200-96258200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
19	chr13:96231000-96246400	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
20	chr13:96231600-96260000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
21	chr13:96231800-96256800	Weak transcription	Skeletal Muscle Female	skeletal muscle
22	chr13:96232200-96272800	Weak transcription	Brain Substantia Nigra	brain
23	chr13:96235400-96253400	Weak transcription	Left Ventricle	heart
24	chr13:96235600-96284200	Weak transcription	Rectal Smooth Muscle	rectum
25	chr13:96236800-96246200	Strong transcription	HSMM	muscle
26	chr13:96237000-96246400	Strong transcription	A549	lung
27	chr13:96238000-96256400	Weak transcription	Placenta	Placenta
28	chr13:96238200-96261000	Weak transcription	Spleen	Spleen
29	chr13:96239800-96259800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
30	chr13:96240000-96245600	Weak transcription	Pancreatic Islets	Pancreatic Islet
31	chr13:96240000-96252200	Weak transcription	Brain Inferior Temporal Lobe	brain
32	chr13:96240000-96252400	Weak transcription	Brain Cingulate Gyrus	brain
33	chr13:96240000-96253600	Weak transcription	H9 Cell Line	embryonic stem cell
34	chr13:96240000-96261200	Weak transcription	Colon Smooth Muscle	Colon
35	chr13:96240000-96272800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
36	chr13:96240000-96273000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
37	chr13:96240200-96249200	Weak transcription	NHLF	lung
38	chr13:96240200-96252200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
39	chr13:96240200-96252200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
40	chr13:96240200-96252200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
41	chr13:96240200-96253400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
42	chr13:96240200-96255800	Weak transcription	Fetal Intestine Large	intestine
43	chr13:96240200-96256000	Weak transcription	Fetal Intestine Small	intestine
44	chr13:96240200-96256200	Weak transcription	Aorta	Aorta
45	chr13:96241000-96246400	Strong transcription	Fetal Lung	lung
46	chr13:96241200-96260800	Weak transcription	Fetal Heart	heart
47	chr13:96241400-96246200	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
48	chr13:96241600-96245400	Strong transcription	Ovary	ovary
49	chr13:96241600-96246000	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
50	chr13:96242200-96272600	Weak transcription	Brain Angular Gyrus	brain

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