Variant report

Variant	rs74109010
Chromosome Location	chr13:96254627-96254628
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs16951257	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17882446	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17885605	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2389266	1.00[EUR][1000 genomes]
rs34303958	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4394949	1.00[EUR][1000 genomes]
rs55649836	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55671956	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56397503	1.00[EUR][1000 genomes]
rs58386476	0.87[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs59863382	1.00[AMR][1000 genomes]
rs60689318	1.00[EUR][1000 genomes]
rs61645359	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7323853	1.00[EUR][1000 genomes]
rs74106020	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74106032	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74106197	1.00[EUR][1000 genomes]
rs74106202	1.00[EUR][1000 genomes]
rs74109004	1.00[EUR][1000 genomes]
rs74109005	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74109006	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74109007	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74109008	0.83[AFR][1000 genomes]
rs74109009	1.00[AFR][1000 genomes]
rs74109011	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74109012	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74109013	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74109014	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74109015	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74109016	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74109017	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74109018	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74109019	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74109020	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74109021	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74109022	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7984248	1.00[EUR][1000 genomes]
rs7990355	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs9671129	1.00[EUR][1000 genomes]

No data

Chromatin state (count:81 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:96229000-96256200	Weak transcription	Gastric	stomach
2	chr13:96229600-96256000	Weak transcription	Right Ventricle	heart
3	chr13:96230200-96258200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
4	chr13:96231600-96260000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr13:96231800-96256800	Weak transcription	Skeletal Muscle Female	skeletal muscle
6	chr13:96232200-96272800	Weak transcription	Brain Substantia Nigra	brain
7	chr13:96235600-96284200	Weak transcription	Rectal Smooth Muscle	rectum
8	chr13:96238000-96256400	Weak transcription	Placenta	Placenta
9	chr13:96238200-96261000	Weak transcription	Spleen	Spleen
10	chr13:96239800-96259800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
11	chr13:96240000-96261200	Weak transcription	Colon Smooth Muscle	Colon
12	chr13:96240000-96272800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr13:96240000-96273000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
14	chr13:96240200-96255800	Weak transcription	Fetal Intestine Large	intestine
15	chr13:96240200-96256000	Weak transcription	Fetal Intestine Small	intestine
16	chr13:96240200-96256200	Weak transcription	Aorta	Aorta
17	chr13:96241200-96260800	Weak transcription	Fetal Heart	heart
18	chr13:96242200-96272600	Weak transcription	Brain Angular Gyrus	brain
19	chr13:96243200-96256200	Weak transcription	Fetal Brain Male	brain
20	chr13:96246400-96278600	Weak transcription	Pancreatic Islets	Pancreatic Islet
21	chr13:96247200-96259600	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
22	chr13:96247200-96267000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
23	chr13:96247800-96255000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
24	chr13:96247800-96256000	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
25	chr13:96247800-96261200	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
26	chr13:96247800-96293600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr13:96248000-96256200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
28	chr13:96248000-96276600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
29	chr13:96248200-96256000	Weak transcription	Esophagus	oesophagus
30	chr13:96249000-96264800	Strong transcription	iPS-18 Cell Line	embryonic stem cell
31	chr13:96249400-96272200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
32	chr13:96249800-96255200	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
33	chr13:96251400-96255200	Strong transcription	Brain Germinal Matrix	brain
34	chr13:96251400-96294400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
35	chr13:96251600-96255200	Strong transcription	NH-A	brain
36	chr13:96251600-96255600	Strong transcription	Cortex derived primary cultured neurospheres	brain
37	chr13:96251600-96255800	Strong transcription	Osteobl	bone
38	chr13:96252000-96255000	Strong transcription	Ovary	ovary
39	chr13:96252000-96255600	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
40	chr13:96252000-96258000	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
41	chr13:96252000-96259000	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
42	chr13:96252200-96254800	Strong transcription	Duodenum Smooth Muscle	Duodenum
43	chr13:96252200-96255000	Strong transcription	Brain Anterior Caudate	brain
44	chr13:96252200-96255200	Strong transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
45	chr13:96252200-96255200	Strong transcription	Muscle Satellite Cultured Cells	--
46	chr13:96252200-96255200	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
47	chr13:96252200-96256000	Strong transcription	Fetal Brain Female	brain
48	chr13:96252200-96256200	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
49	chr13:96252200-96256600	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
50	chr13:96252200-96257000	Strong transcription	Foreskin Melanocyte Primary Cells skin01	Skin

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