Variant report

Variant	rs7410928
Chromosome Location	chr1:215257767-215257768
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs10127521	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10127656	0.80[AMR][1000 genomes]
rs10746454	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10746455	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10779640	0.80[AMR][1000 genomes]
rs10779642	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10779643	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10864150	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10864154	0.80[AMR][1000 genomes]
rs11120495	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11120497	0.84[EUR][1000 genomes]
rs11120500	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12039875	0.85[ASN][1000 genomes]
rs12135076	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12410041	0.92[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12742137	0.80[AMR][1000 genomes]
rs2363557	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2363558	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2363559	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2363560	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2885813	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2885815	0.84[AMR][1000 genomes]
rs4262516	0.92[AMR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4269745	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4300189	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4303048	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4375232	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4531266	0.82[AMR][1000 genomes]
rs4571941	0.82[AMR][1000 genomes]
rs4607848	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs61818297	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs61818299	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs61818320	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs61818328	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6662353	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6675926	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs6678758	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs6688713	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6695967	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs6696333	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6699161	0.83[ASN][1000 genomes]
rs72735327	0.86[ASN][1000 genomes]
rs72735329	0.86[ASN][1000 genomes]
rs72735337	0.81[ASN][1000 genomes]
rs7513709	0.80[AMR][1000 genomes]
rs7516689	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7541543	0.80[AMR][1000 genomes]
rs7547655	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7555013	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7555727	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2754411	chr1:215235605-215281605	Bivalent/Poised TSS Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Weak transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:215254800-215259000	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr1:215254800-215260000	Active TSS	Fetal Brain Female	brain
3	chr1:215255000-215258400	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr1:215255200-215258600	Active TSS	Fetal Brain Male	brain
5	chr1:215255200-215259000	Active TSS	NHDF-Ad	bronchial
6	chr1:215255400-215257800	Bivalent/Poised TSS	Fetal Intestine Large	intestine
7	chr1:215255600-215258400	Active TSS	Osteobl	bone
8	chr1:215255800-215258800	Active TSS	NHLF	lung
9	chr1:215256200-215258200	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr1:215257200-215258200	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr1:215257200-215259800	Weak transcription	Gastric	stomach
12	chr1:215257400-215257800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr1:215257400-215257800	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr1:215257400-215257800	Active TSS	Muscle Satellite Cultured Cells	--
15	chr1:215257400-215258200	Enhancers	NH-A	brain
16	chr1:215257400-215260600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
17	chr1:215257600-215258200	Enhancers	Brain Germinal Matrix	brain
18	chr1:215257600-215258400	Enhancers	Cortex derived primary cultured neurospheres	brain

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