Variant report

Variant	rs74125987
Chromosome Location	chr1:172842639-172842640
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10912483	0.88[AFR][1000 genomes]
rs12074518	0.88[AFR][1000 genomes]
rs55680918	0.88[AFR][1000 genomes]
rs55684370	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60311444	0.90[AFR][1000 genomes]
rs74125944	0.88[AFR][1000 genomes]
rs74125985	0.93[AFR][1000 genomes]
rs74125986	0.97[AFR][1000 genomes]
rs74128733	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv3587	chr1:172836950-172882218	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:172831200-172844000	Weak transcription	HUVEC	blood vessel
2	chr1:172837000-172844000	Weak transcription	Primary T helper cells fromperipheralblood	blood
3	chr1:172837400-172844000	Weak transcription	Primary T cells from cord blood	blood
4	chr1:172837400-172844000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
5	chr1:172837400-172844000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
6	chr1:172837400-172844000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
7	chr1:172837600-172844200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
8	chr1:172840600-172855200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr1:172840800-172843800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
10	chr1:172840800-172843800	Weak transcription	Primary T helper cells PMA-I stimulated	--
11	chr1:172840800-172844000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
12	chr1:172840800-172844000	Weak transcription	Muscle Satellite Cultured Cells	--
13	chr1:172840800-172844000	Weak transcription	NHEK	skin
14	chr1:172840800-172844200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links