Variant report

Variant	rs74126718
Chromosome Location	chr1:151892785-151892786
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs74126309	1.00[AMR][1000 genomes]
rs74126716	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74126763	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74129507	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1007097	chr1:151832796-152227977	Strong transcription Genic enhancers Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	196 gene(s)	inside rSNPs	diseases
2	nsv1012327	chr1:151835544-152200890	Enhancers Bivalent/Poised TSS Flanking Active TSS Strong transcription Active TSS Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	196 gene(s)	inside rSNPs	diseases
3	nsv535159	chr1:151835544-152200890	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Genic enhancers Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	196 gene(s)	inside rSNPs	diseases
4	nsv547852	chr1:151843044-151955230	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
5	nsv872441	chr1:151850072-152034430	Weak transcription Enhancers Genic enhancers Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	191 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:151891200-151892800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr1:151891200-151892800	Enhancers	Hela-S3	cervix
3	chr1:151891600-151894400	Enhancers	Primary hematopoietic stem cells	blood
4	chr1:151891600-151894600	Enhancers	Monocytes-CD14+_RO01746	blood
5	chr1:151891800-151892800	Enhancers	HepG2	liver
6	chr1:151891800-151895000	Enhancers	Primary monocytes fromperipheralblood	blood
7	chr1:151891800-151895200	Enhancers	Primary B cells from peripheral blood	blood
8	chr1:151892200-151894000	Enhancers	K562	blood
9	chr1:151892200-151894400	Enhancers	Primary neutrophils fromperipheralblood	blood
10	chr1:151892200-151894600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr1:151892200-151895000	Enhancers	Primary B cells from cord blood	blood
12	chr1:151892200-151895000	Enhancers	Primary hematopoietic stem cells short term culture	blood
13	chr1:151892400-151892800	Flanking Active TSS	GM12878-XiMat	blood
14	chr1:151892400-151894400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
15	chr1:151892600-151892800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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