Variant report

Variant	rs74127895
Chromosome Location	chr1:152192326-152192327
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 73 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs11204983	1.00[EUR][1000 genomes]
rs12060296	1.00[EUR][1000 genomes]
rs12066296	1.00[EUR][1000 genomes]
rs12067755	1.00[EUR][1000 genomes]
rs12078392	1.00[EUR][1000 genomes]
rs12083959	1.00[EUR][1000 genomes]
rs16833865	1.00[EUR][1000 genomes]
rs16833870	1.00[EUR][1000 genomes]
rs16833876	1.00[EUR][1000 genomes]
rs1858481	1.00[EUR][1000 genomes]
rs28655434	1.00[EUR][1000 genomes]
rs3120654	1.00[EUR][1000 genomes]
rs3126087	1.00[EUR][1000 genomes]
rs3126093	1.00[EUR][1000 genomes]
rs3134871	1.00[EUR][1000 genomes]
rs41363352	1.00[EUR][1000 genomes]
rs56024264	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56106510	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56124007	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56156422	1.00[EUR][1000 genomes]
rs56244386	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57272962	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57934636	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58132665	1.00[EUR][1000 genomes]
rs58788896	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58823849	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60525930	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60709044	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74126309	1.00[AMR][1000 genomes]
rs74126341	1.00[EUR][1000 genomes]
rs74126343	1.00[EUR][1000 genomes]
rs74126763	1.00[AMR][1000 genomes]
rs74127703	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74127885	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74127887	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74127894	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74127917	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74127918	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74129414	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74129429	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74129447	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74129458	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74129459	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74129463	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74129464	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74129466	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74129507	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:26 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1007097	chr1:151832796-152227977	Strong transcription Genic enhancers Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	196 gene(s)	inside rSNPs	diseases
2	nsv1012327	chr1:151835544-152200890	Enhancers Bivalent/Poised TSS Flanking Active TSS Strong transcription Active TSS Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	196 gene(s)	inside rSNPs	diseases
3	nsv535159	chr1:151835544-152200890	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Genic enhancers Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	196 gene(s)	inside rSNPs	diseases
4	nsv547853	chr1:152008671-152236760	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	83 gene(s)	inside rSNPs	diseases
5	nsv1014095	chr1:152104486-152454591	Active TSS Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
6	nsv471347	chr1:152184558-152196669	ZNF genes & repeats Enhancers Active TSS Weak transcription	TF binding region CpG island lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases
7	esv3351698	chr1:152184828-152192326	Active TSS Weak transcription ZNF genes & repeats	miRNA target site	n/a	inside rSNPs	diseases
8	nsv8391	chr1:152185328-152194083	ZNF genes & repeats Active TSS Weak transcription	lncRNA	n/a	inside rSNPs	diseases
9	nsv824598	chr1:152185654-152193520	Weak transcription Active TSS ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
10	nsv824609	chr1:152185665-152193520	Active TSS ZNF genes & repeats Weak transcription	n/a	n/a	inside rSNPs	diseases
11	nsv824620	chr1:152185672-152193520	Active TSS Weak transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
12	esv1792227	chr1:152185731-152193368	Weak transcription ZNF genes & repeats Active TSS	n/a	n/a	inside rSNPs	diseases
13	esv1797676	chr1:152185731-152193368	Weak transcription ZNF genes & repeats Active TSS	n/a	n/a	inside rSNPs	diseases
14	esv1821751	chr1:152185731-152193368	ZNF genes & repeats Weak transcription Active TSS	n/a	n/a	inside rSNPs	diseases
15	esv1828930	chr1:152185731-152193368	ZNF genes & repeats Weak transcription Active TSS	n/a	n/a	inside rSNPs	diseases
16	esv1829215	chr1:152185731-152193368	Weak transcription ZNF genes & repeats Active TSS	n/a	n/a	inside rSNPs	diseases
17	esv19713	chr1:152185869-152196724	Enhancers Weak transcription ZNF genes & repeats Active TSS	TF binding region CpG island lncRNA	1 gene(s)	inside rSNPs	diseases
18	esv1794879	chr1:152185890-152193168	Active TSS ZNF genes & repeats Weak transcription	n/a	n/a	inside rSNPs	diseases
19	esv1796906	chr1:152185890-152193168	Weak transcription Active TSS ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
20	esv1828100	chr1:152185890-152193168	ZNF genes & repeats Weak transcription Active TSS	n/a	n/a	inside rSNPs	diseases
21	esv1830019	chr1:152185890-152193168	Active TSS ZNF genes & repeats Weak transcription	n/a	n/a	inside rSNPs	diseases
22	esv1800231	chr1:152185890-152196175	ZNF genes & repeats Active TSS Enhancers Weak transcription	lncRNA	n/a	inside rSNPs	diseases
23	esv20602	chr1:152185909-152193469	Weak transcription ZNF genes & repeats Active TSS	n/a	n/a	inside rSNPs	diseases
24	esv3377292	chr1:152188428-152192926	ZNF genes & repeats Weak transcription	n/a	n/a	inside rSNPs	diseases
25	nsv824631	chr1:152191386-152193520	Weak transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
26	nsv824642	chr1:152191684-152193520	ZNF genes & repeats Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:152191400-152193600	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr1:152191600-152197200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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