Variant report

Variant	rs74131789
Chromosome Location	chr10:52932364-52932365
allele	C/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 97 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:96)

rs_ID	r²[population]
rs16914938	0.90[EUR][1000 genomes]
rs16914978	0.95[EUR][1000 genomes]
rs16914985	0.95[EUR][1000 genomes]
rs16915151	0.95[EUR][1000 genomes]
rs16915184	0.95[EUR][1000 genomes]
rs1904673	0.82[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs1904674	0.82[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs1904680	0.95[EUR][1000 genomes]
rs1904684	0.95[EUR][1000 genomes]
rs1904685	0.95[EUR][1000 genomes]
rs1904686	0.95[EUR][1000 genomes]
rs41403246	0.95[EUR][1000 genomes]
rs55713575	0.95[EUR][1000 genomes]
rs55806342	0.95[EUR][1000 genomes]
rs55847608	0.95[EUR][1000 genomes]
rs56142495	0.95[EUR][1000 genomes]
rs56408019	0.82[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs56822959	0.95[EUR][1000 genomes]
rs59014714	0.95[EUR][1000 genomes]
rs59140787	0.95[EUR][1000 genomes]
rs59686966	0.82[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs60646280	0.95[EUR][1000 genomes]
rs60965856	0.95[EUR][1000 genomes]
rs7075809	0.95[EUR][1000 genomes]
rs7092050	0.95[EUR][1000 genomes]
rs7093618	0.95[EUR][1000 genomes]
rs7094064	0.95[EUR][1000 genomes]
rs7100315	0.90[EUR][1000 genomes]
rs74131784	0.83[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs74131787	0.83[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs74131792	0.86[AFR][1000 genomes]
rs74131799	0.95[EUR][1000 genomes]
rs74133506	0.95[EUR][1000 genomes]
rs74133508	0.95[EUR][1000 genomes]
rs74133509	0.95[EUR][1000 genomes]
rs74133510	0.95[EUR][1000 genomes]
rs74133511	0.95[EUR][1000 genomes]
rs74133512	0.95[EUR][1000 genomes]
rs74133514	0.95[EUR][1000 genomes]
rs74133517	0.95[EUR][1000 genomes]
rs74133521	0.95[EUR][1000 genomes]
rs74133522	0.95[EUR][1000 genomes]
rs74133523	0.95[EUR][1000 genomes]
rs74133524	0.95[EUR][1000 genomes]
rs74133525	0.95[EUR][1000 genomes]
rs74133529	0.95[EUR][1000 genomes]
rs74133530	0.95[EUR][1000 genomes]
rs74133531	0.95[EUR][1000 genomes]
rs74133532	0.95[EUR][1000 genomes]
rs74133533	0.95[EUR][1000 genomes]
rs74133534	0.95[EUR][1000 genomes]
rs74133535	0.90[EUR][1000 genomes]
rs74133537	0.95[EUR][1000 genomes]
rs7907338	0.95[EUR][1000 genomes]
rs7913794	0.95[EUR][1000 genomes]
rs7915033	0.95[EUR][1000 genomes]
rs7917209	0.95[EUR][1000 genomes]
rs7917357	0.95[EUR][1000 genomes]
rs9299471	0.83[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs9414837	0.95[EUR][1000 genomes]
rs9414843	0.82[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs9414845	0.82[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs9414846	0.82[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs9414847	0.82[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs9414850	0.82[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs9414851	0.83[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs9414852	0.83[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs9414853	0.83[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs9414855	0.83[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs9414856	0.83[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs9414857	0.83[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs9414858	0.83[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs9414859	0.83[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs9414860	0.83[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs9414861	0.83[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs9414863	0.83[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs9414864	0.82[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs9414865	0.82[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs9415735	0.95[EUR][1000 genomes]
rs9415743	0.95[EUR][1000 genomes]
rs9415747	0.95[EUR][1000 genomes]
rs9415758	0.82[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs9415759	0.82[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs9415760	0.82[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs9415761	0.82[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs9415764	0.82[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs9415765	0.83[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs9415766	0.83[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs9415768	0.83[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs9415769	0.83[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs9415771	0.83[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs9415772	0.85[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs9415773	0.83[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs9415774	0.82[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs9415775	0.82[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs9415776	0.83[AFR][1000 genomes];0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1036645	chr10:52804961-53159076	Enhancers Bivalent/Poised TSS Bivalent Enhancer Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:52910600-52942400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr10:52929000-52932600	Enhancers	NHDF-Ad	bronchial
3	chr10:52929600-52932600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr10:52929800-52944600	Weak transcription	Left Ventricle	heart
5	chr10:52930400-52934200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr10:52930800-52932400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr10:52931000-52936400	Weak transcription	HSMM	muscle
8	chr10:52931400-52936200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr10:52931400-52936400	Weak transcription	HSMMtube	muscle
10	chr10:52931600-52936400	Weak transcription	NHLF	lung
11	chr10:52931600-52936600	Weak transcription	Colon Smooth Muscle	Colon
12	chr10:52931800-52936400	Weak transcription	Muscle Satellite Cultured Cells	--
13	chr10:52932200-52936400	Weak transcription	Osteobl	bone

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