Variant report

Variant	rs74133503
Chromosome Location	chr10:52939478-52939479
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 62 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:61)

rs_ID	r²[population]
rs16914983	1.00[AMR][1000 genomes]
rs16915124	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16915151	0.87[AFR][1000 genomes]
rs16915184	0.87[AFR][1000 genomes]
rs16915292	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16915357	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1904672	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1904680	0.87[AFR][1000 genomes]
rs1904681	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1904684	0.92[AFR][1000 genomes]
rs1904685	0.92[AFR][1000 genomes]
rs1904686	0.92[AFR][1000 genomes]
rs1904690	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4115004	1.00[AMR][1000 genomes]
rs55713575	0.92[AFR][1000 genomes]
rs55847608	0.92[AFR][1000 genomes]
rs56142495	0.92[AFR][1000 genomes]
rs56822959	0.92[AFR][1000 genomes]
rs58049871	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58504594	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59014714	0.92[AFR][1000 genomes]
rs60646280	0.92[AFR][1000 genomes]
rs60965856	0.92[AFR][1000 genomes]
rs7075809	0.92[AFR][1000 genomes]
rs7092050	0.92[AFR][1000 genomes]
rs7093618	0.92[AFR][1000 genomes]
rs7094064	0.92[AFR][1000 genomes]
rs7095314	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74131774	1.00[AMR][1000 genomes]
rs74131778	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74131782	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74131795	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74133505	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74133506	0.94[AFR][1000 genomes]
rs74133508	0.94[AFR][1000 genomes]
rs74133509	0.94[AFR][1000 genomes]
rs74133510	0.94[AFR][1000 genomes]
rs74133511	0.92[AFR][1000 genomes]
rs74133512	0.92[AFR][1000 genomes]
rs74133514	0.92[AFR][1000 genomes]
rs74133516	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74133517	0.92[AFR][1000 genomes]
rs74133521	0.92[AFR][1000 genomes]
rs74133522	0.87[AFR][1000 genomes]
rs74133523	0.81[AFR][1000 genomes]
rs74133524	0.87[AFR][1000 genomes]
rs74133525	0.87[AFR][1000 genomes]
rs74133528	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74133529	0.87[AFR][1000 genomes]
rs74133532	0.87[AFR][1000 genomes]
rs74133533	0.87[AFR][1000 genomes]
rs74133534	0.87[AFR][1000 genomes]
rs74133535	0.87[AFR][1000 genomes]
rs74133538	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74133539	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74133540	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74133541	1.00[AMR][1000 genomes]
rs7913794	0.87[AFR][1000 genomes]
rs7915033	0.87[AFR][1000 genomes]
rs7917209	0.87[AFR][1000 genomes]
rs7917357	0.87[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1036645	chr10:52804961-53159076	Enhancers Bivalent/Poised TSS Bivalent Enhancer Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:52910600-52942400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr10:52929800-52944600	Weak transcription	Left Ventricle	heart
3	chr10:52936000-52941200	Weak transcription	Fetal Muscle Trunk	muscle
4	chr10:52936800-52964400	Weak transcription	NHLF	lung
5	chr10:52939400-52942200	Weak transcription	Aorta	Aorta

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