Variant report

Variant	rs74133530
Chromosome Location	chr10:52955985-52955986
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:52953285..52955453-chr10:52955956..52958454,2	MCF-7	breast:

Extended variants
information (count: 103 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:102)

rs_ID	r²[population]
rs10490977	1.00[ASN][1000 genomes]
rs10996353	1.00[ASN][1000 genomes]
rs12257648	1.00[ASN][1000 genomes]
rs16914938	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16914978	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16914985	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16915151	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16915184	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16915908	1.00[ASN][1000 genomes]
rs1904673	1.00[EUR][1000 genomes]
rs1904674	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1904680	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1904684	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1904685	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1904686	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs41403246	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55713575	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55806342	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55847608	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56142495	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56408019	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56822959	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59014714	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59140787	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59374151	1.00[ASN][1000 genomes]
rs59686966	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60646280	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60965856	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7075809	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7092050	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7093618	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7094064	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7100315	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73338462	1.00[ASN][1000 genomes]
rs74131784	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74131787	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74131789	0.95[EUR][1000 genomes]
rs74131799	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74131800	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74133506	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74133508	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74133509	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74133510	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74133511	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74133512	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74133514	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74133517	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74133521	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74133522	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74133523	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74133524	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74133525	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74133529	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74133531	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74133532	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74133533	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74133534	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74133535	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74133537	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7907338	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7913794	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7915033	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7917209	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7917357	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9299471	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9414837	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9414843	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9414845	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9414846	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9414847	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9414850	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9414851	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9414852	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9414853	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9414855	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9414856	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9414857	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9414858	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9414859	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9414860	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9414861	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9414863	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9414864	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9414865	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9415735	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9415743	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9415747	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9415758	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9415759	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9415760	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9415761	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9415764	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9415765	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9415766	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9415768	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9415769	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9415771	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9415772	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9415773	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9415774	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9415775	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9415776	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1036645	chr10:52804961-53159076	Enhancers Bivalent/Poised TSS Bivalent Enhancer Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:52936800-52964400	Weak transcription	NHLF	lung
2	chr10:52946400-52964400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr10:52949200-52966400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr10:52950400-52961400	Weak transcription	Aorta	Aorta
5	chr10:52950400-52975800	Weak transcription	Sigmoid Colon	Sigmoid Colon
6	chr10:52954800-52964200	Weak transcription	Psoas Muscle	Psoas
7	chr10:52955600-52956000	Enhancers	Stomach Mucosa	stomach
8	chr10:52955600-52956800	Enhancers	Rectal Smooth Muscle	rectum

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