Variant report

Variant	rs74133540
Chromosome Location	chr10:52975047-52975048
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:52973848..52976452-chr10:52979650..52982235,2	MCF-7	breast:

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs16914983	1.00[AMR][1000 genomes]
rs16915124	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16915292	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16915357	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1904672	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1904681	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1904690	1.00[AMR][1000 genomes]
rs4115004	1.00[AMR][1000 genomes]
rs58049871	1.00[AMR][1000 genomes]
rs58504594	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7095314	1.00[AMR][1000 genomes]
rs74131774	1.00[AMR][1000 genomes]
rs74131778	1.00[AMR][1000 genomes]
rs74131782	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74131795	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74133503	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74133505	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74133516	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74133528	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74133538	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74133539	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74133541	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1036645	chr10:52804961-53159076	Enhancers Bivalent/Poised TSS Bivalent Enhancer Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:52950400-52975800	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr10:52958800-52975600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr10:52973400-52976000	Enhancers	Fetal Stomach	stomach
4	chr10:52973800-52977200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr10:52974000-52975400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
6	chr10:52974000-52976200	Enhancers	iPS-20b Cell Line	embryonic stem cell
7	chr10:52974000-52976200	Enhancers	NHDF-Ad	bronchial
8	chr10:52974000-52976200	Enhancers	NHLF	lung
9	chr10:52974000-52978000	Enhancers	Brain Germinal Matrix	brain
10	chr10:52974200-52975200	Enhancers	H1 Cell Line	embryonic stem cell
11	chr10:52974200-52975400	Enhancers	Fetal Muscle Trunk	muscle
12	chr10:52974200-52975400	Enhancers	Psoas Muscle	Psoas
13	chr10:52974200-52975600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
14	chr10:52974200-52977400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr10:52974400-52975200	Enhancers	HUES64 Cell Line	embryonic stem cell
16	chr10:52974400-52975200	Enhancers	iPS-15b Cell Line	embryonic stem cell
17	chr10:52974400-52976000	Enhancers	HUES48 Cell Line	embryonic stem cell
18	chr10:52974400-52976200	Enhancers	iPS-18 Cell Line	embryonic stem cell
19	chr10:52974600-52975800	Weak transcription	Aorta	Aorta
20	chr10:52974600-52976000	Weak transcription	HSMMtube	muscle
21	chr10:52974800-52975800	Weak transcription	Fetal Lung	lung
22	chr10:52974800-52976000	Weak transcription	Rectal Smooth Muscle	rectum
23	chr10:52974800-52976400	Enhancers	ES-I3 Cell Line	embryonic stem cell
24	chr10:52974800-52977200	Weak transcription	Cortex derived primary cultured neurospheres	brain
25	chr10:52974800-52979600	Weak transcription	Fetal Muscle Leg	muscle
26	chr10:52975000-52975800	Weak transcription	Colon Smooth Muscle	Colon

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