Variant report

Variant	rs74133542
Chromosome Location	chr10:52983607-52983608
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10490976	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16915870	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16915935	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16915940	0.87[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs57636490	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57957904	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61295989	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74133549	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7901396	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1036645	chr10:52804961-53159076	Enhancers Bivalent/Poised TSS Bivalent Enhancer Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:52976000-52984000	Weak transcription	Aorta	Aorta
2	chr10:52976200-52988400	Weak transcription	H1 Cell Line	embryonic stem cell
3	chr10:52980000-52983800	Weak transcription	Fetal Muscle Leg	muscle
4	chr10:52983200-52983800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr10:52983200-52983800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr10:52983400-52983800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr10:52983600-52983800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr10:52983600-52983800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr10:52983600-52983800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr10:52983600-52983800	Enhancers	Fetal Lung	lung
11	chr10:52983600-52983800	Enhancers	Stomach Smooth Muscle	stomach
12	chr10:52983600-52983800	Active TSS	NHLF	lung
13	chr10:52983600-52983800	Enhancers	Osteobl	bone
14	chr10:52983600-52984000	Enhancers	H9 Cell Line	embryonic stem cell
15	chr10:52983600-52984000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr10:52983600-52984000	Enhancers	Fetal Heart	heart
17	chr10:52983600-52984000	Enhancers	Rectal Smooth Muscle	rectum
18	chr10:52983600-52984200	Flanking Active TSS	NHDF-Ad	bronchial
19	chr10:52983600-52984400	Enhancers	Cortex derived primary cultured neurospheres	brain
20	chr10:52983600-52984400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
21	chr10:52983600-52984800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
22	chr10:52983600-52985200	Enhancers	Fetal Stomach	stomach

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