Variant report

Variant	rs74133958
Chromosome Location	chr10:52837408-52837409
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:52832484..52833988-chr10:52835992..52837513,2	K562	blood:

Variant related genes	Relation type
ENSG00000185532	Chromatin interaction

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10218997	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10995567	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10995590	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12247631	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes]
rs12253781	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes]
rs12264657	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12265235	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2339626	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2339670	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes]
rs28438967	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2879545	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831873	chr10:52710610-52899540	Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv895394	chr10:52793177-52866503	Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv1036645	chr10:52804961-53159076	Enhancers Bivalent/Poised TSS Bivalent Enhancer Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:52832800-52840000	Active TSS	Aorta	Aorta
2	chr10:52833000-52837600	Active TSS	Colon Smooth Muscle	Colon
3	chr10:52833200-52837600	Active TSS	NHLF	lung
4	chr10:52833800-52837600	Active TSS	Stomach Smooth Muscle	stomach
5	chr10:52834800-52842800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr10:52835200-52837600	Active TSS	Fetal Muscle Leg	muscle
7	chr10:52835400-52837600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
8	chr10:52835600-52838000	Weak transcription	Left Ventricle	heart
9	chr10:52835600-52842400	Weak transcription	Skeletal Muscle Female	skeletal muscle
10	chr10:52835800-52839400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr10:52835800-52839400	Weak transcription	Fetal Brain Male	brain
12	chr10:52836000-52839600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
13	chr10:52836000-52840000	Weak transcription	Fetal Lung	lung
14	chr10:52836200-52837600	Enhancers	Cortex derived primary cultured neurospheres	brain
15	chr10:52836200-52839200	Weak transcription	H9 Cell Line	embryonic stem cell
16	chr10:52836200-52840000	Weak transcription	Fetal Brain Female	brain
17	chr10:52836200-52841200	Weak transcription	Skeletal Muscle Male	skeletal muscle
18	chr10:52836200-52842800	Weak transcription	Psoas Muscle	Psoas
19	chr10:52836400-52837600	Enhancers	NHDF-Ad	bronchial
20	chr10:52836400-52837800	Enhancers	iPS-18 Cell Line	embryonic stem cell
21	chr10:52836400-52840000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
22	chr10:52836400-52847400	Weak transcription	Right Ventricle	heart
23	chr10:52836600-52838000	Weak transcription	Brain Anterior Caudate	brain
24	chr10:52836600-52841000	Weak transcription	Fetal Muscle Trunk	muscle
25	chr10:52837000-52837800	Enhancers	Rectal Smooth Muscle	rectum
26	chr10:52837000-52838800	Weak transcription	H1 Cell Line	embryonic stem cell
27	chr10:52837000-52839000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
28	chr10:52837000-52839200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
29	chr10:52837000-52839400	Weak transcription	Rectal Mucosa Donor 29	rectum
30	chr10:52837000-52839400	Weak transcription	Right Atrium	heart
31	chr10:52837000-52840000	Weak transcription	Fetal Stomach	stomach
32	chr10:52837200-52838800	Weak transcription	HUES48 Cell Line	embryonic stem cell
33	chr10:52837200-52838800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
34	chr10:52837200-52839000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
35	chr10:52837200-52839400	Weak transcription	Fetal Kidney	kidney
36	chr10:52837200-52843000	Weak transcription	Duodenum Smooth Muscle	Duodenum
37	chr10:52837200-52849600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
38	chr10:52837400-52837600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
39	chr10:52837400-52837600	Flanking Active TSS	Breast Myoepithelial Primary Cells	Breast

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