Variant report

Variant	rs74138755
Chromosome Location	chr1:211692269-211692270
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:210545206..210547254-chr1:211690424..211692369,2	MCF-7	breast:
2	chr1:211690573..211693033-chr1:211694499..211696048,2	MCF-7	breast:
3	chr1:211692018..211701005-chr1:211746984..211755135,17	MCF-7	breast:

Variant related genes	Relation type
ENSG00000170385	Chromatin interaction

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10159027	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12057566	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs17017668	0.90[AFR][1000 genomes]
rs56032913	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56105820	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56197256	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59256122	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73072846	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73072847	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73072849	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73072853	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7354818	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7354876	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7355003	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7355098	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7355103	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7355184	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7355185	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7355215	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74138748	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74138754	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74138756	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74138757	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74138758	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs74138763	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7529964	0.89[EUR][1000 genomes]
rs9308420	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832514	chr1:211630247-211794963	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	esv1826724	chr1:211684336-211694508	Enhancers Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:211688200-211701200	Weak transcription	Gastric	stomach
2	chr1:211689400-211694400	Weak transcription	Right Atrium	heart
3	chr1:211689400-211701200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr1:211689400-211715000	Weak transcription	Placenta Amnion	Placenta Amnion
5	chr1:211689600-211692800	Weak transcription	Fetal Muscle Leg	muscle
6	chr1:211690200-211693400	Enhancers	Primary B cells from cord blood	blood
7	chr1:211690200-211693400	Enhancers	Primary B cells from peripheral blood	blood
8	chr1:211690200-211698400	Enhancers	Liver	Liver
9	chr1:211690400-211695800	Weak transcription	H9 Cell Line	embryonic stem cell
10	chr1:211690800-211694000	Weak transcription	Placenta	Placenta
11	chr1:211690800-211694400	Weak transcription	K562	blood
12	chr1:211690800-211694600	Weak transcription	A549	lung
13	chr1:211691000-211700400	Weak transcription	Fetal Thymus	thymus
14	chr1:211691200-211692400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
15	chr1:211691200-211694400	Weak transcription	Hela-S3	cervix
16	chr1:211691400-211693000	Enhancers	Primary monocytes fromperipheralblood	blood
17	chr1:211691800-211692400	Weak transcription	Spleen	Spleen
18	chr1:211691800-211692400	Flanking Active TSS	GM12878-XiMat	blood
19	chr1:211691800-211692400	Enhancers	Monocytes-CD14+_RO01746	blood
20	chr1:211691800-211693600	Flanking Active TSS	HepG2	liver
21	chr1:211692000-211693200	Weak transcription	Primary hematopoietic stem cells short term culture	blood

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