Variant report

Variant	rs74139652
Chromosome Location	chr1:220600821-220600822
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:220594605..220597600-chr1:220599803..220603314,3	MCF-7	breast:

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs12562165	0.91[EUR][1000 genomes]
rs12562172	0.91[EUR][1000 genomes]
rs12563333	0.91[EUR][1000 genomes]
rs12563560	0.91[EUR][1000 genomes]
rs12563619	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12564062	0.87[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12568872	0.91[EUR][1000 genomes]
rs12568969	0.89[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1338775	0.96[EUR][1000 genomes]
rs1933881	0.96[EUR][1000 genomes]
rs55875950	0.94[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56659017	0.97[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57725868	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60843898	0.97[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6669351	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6685446	0.95[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6686532	0.90[AFR][1000 genomes]
rs6688366	0.95[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73092253	1.00[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73092254	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73092256	1.00[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73092261	1.00[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73092264	0.97[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73092269	0.97[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73092271	0.92[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73092272	0.97[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73092273	0.94[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73092281	0.94[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73092282	0.94[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74139653	1.00[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74139660	0.97[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74139668	0.94[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74139669	0.97[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7537705	0.91[EUR][1000 genomes]

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:220598800-220603400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr1:220599000-220601400	Enhancers	Hela-S3	cervix
3	chr1:220599800-220601000	Enhancers	Adipose Nuclei	Adipose
4	chr1:220599800-220603200	Weak transcription	Placenta	Placenta
5	chr1:220600200-220601000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr1:220600200-220601000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr1:220600200-220601000	Enhancers	HMEC	breast
8	chr1:220600200-220601200	Enhancers	NHEK	skin
9	chr1:220600600-220601400	Enhancers	Pancreatic Islets	Pancreatic Islet
10	chr1:220600800-220603200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr1:220600800-220603400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin

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