Variant report

Variant	rs74140948
Chromosome Location	chr1:215355199-215355200
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:215354699..215355750-chr1:215690763..215692016,3	MCF-7	breast:
2	chr1:215354644..215355511-chr1:215690679..215691509,5	MCF-7	breast:

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10864155	1.00[ASN][1000 genomes]
rs11806269	1.00[ASN][1000 genomes]
rs11809041	1.00[ASN][1000 genomes]
rs12118235	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12118508	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12118830	1.00[ASN][1000 genomes]
rs12121815	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes]
rs12121939	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12123237	1.00[ASN][1000 genomes]
rs12127285	1.00[ASN][1000 genomes]
rs12132201	1.00[ASN][1000 genomes]
rs12141564	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12146057	1.00[ASN][1000 genomes]
rs1339404	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1339407	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17023977	1.00[ASN][1000 genomes]
rs17024348	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17024370	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17604089	1.00[ASN][1000 genomes]
rs17606405	1.00[ASN][1000 genomes]
rs34999070	1.00[ASN][1000 genomes]
rs56662669	1.00[ASN][1000 genomes]
rs56720553	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57440894	1.00[ASN][1000 genomes]
rs74140846	1.00[ASN][1000 genomes]
rs74140868	1.00[ASN][1000 genomes]
rs74140950	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7531398	1.00[ASN][1000 genomes]
rs7543935	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7551303	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7553910	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv873169	chr1:215264486-215453286	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	Chromatin interactive region miRNA target site	n/a	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:215353400-215355200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr1:215353800-215355400	Weak transcription	Fetal Brain Female	brain
3	chr1:215354800-215356000	ZNF genes & repeats	NHDF-Ad	bronchial
4	chr1:215355000-215355200	ZNF genes & repeats	Brain Germinal Matrix	brain
5	chr1:215355000-215356000	ZNF genes & repeats	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr1:215355000-215356000	ZNF genes & repeats	NHLF	lung
7	chr1:215355000-215356000	ZNF genes & repeats	Osteobl	bone
8	chr1:215355000-215356200	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr1:215355000-215356400	ZNF genes & repeats	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr1:215355000-215356400	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr1:215355000-215356400	ZNF genes & repeats	Gastric	stomach
12	chr1:215355000-215356600	ZNF genes & repeats	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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