Variant report

Variant	rs74146264
Chromosome Location	chr1:224915163-224915164
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:224910297..224912551-chr1:224913621..224915881,2	K562	blood:
2	chr1:224914462..224916100-chr1:224917587..224919956,2	K562	blood:
3	chr1:224912065..224916127-chr1:224919460..224922896,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000229400	Chromatin interaction

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs10915712	1.00[EUR][1000 genomes]
rs10915713	1.00[EUR][1000 genomes]
rs13374584	1.00[EUR][1000 genomes]
rs1499284	1.00[EUR][1000 genomes]
rs16849419	1.00[EUR][1000 genomes]
rs16849547	1.00[EUR][1000 genomes]
rs2794805	1.00[EUR][1000 genomes]
rs55712053	1.00[EUR][1000 genomes]
rs57719973	1.00[AMR][1000 genomes]
rs58814229	1.00[EUR][1000 genomes]
rs59034185	1.00[EUR][1000 genomes]
rs59777302	1.00[EUR][1000 genomes]
rs60846144	1.00[EUR][1000 genomes]
rs61155217	1.00[EUR][1000 genomes]
rs6658918	1.00[EUR][1000 genomes]
rs6659109	1.00[EUR][1000 genomes]
rs6687424	1.00[EUR][1000 genomes]
rs6691181	1.00[EUR][1000 genomes]
rs6702972	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73127901	1.00[EUR][1000 genomes]
rs73129810	1.00[EUR][1000 genomes]
rs73129812	1.00[EUR][1000 genomes]
rs73129837	1.00[EUR][1000 genomes]
rs73129838	1.00[EUR][1000 genomes]
rs73129850	1.00[EUR][1000 genomes]
rs73129853	1.00[EUR][1000 genomes]
rs73129855	1.00[EUR][1000 genomes]
rs73129861	1.00[EUR][1000 genomes]
rs73129867	1.00[EUR][1000 genomes]
rs73129870	1.00[EUR][1000 genomes]
rs73133345	1.00[EUR][1000 genomes]
rs74146265	1.00[AMR][1000 genomes]
rs74146372	1.00[EUR][1000 genomes]
rs74146374	1.00[EUR][1000 genomes]
rs74146377	1.00[EUR][1000 genomes]
rs74146381	1.00[EUR][1000 genomes]
rs74146382	1.00[EUR][1000 genomes]
rs74146383	1.00[EUR][1000 genomes]
rs74146384	1.00[EUR][1000 genomes]
rs74146386	1.00[EUR][1000 genomes]
rs74146389	1.00[EUR][1000 genomes]
rs7512165	1.00[EUR][1000 genomes]
rs7522229	1.00[EUR][1000 genomes]
rs9661679	1.00[EUR][1000 genomes]
rs9661938	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv524125	chr1:224902054-225021860	Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:224885000-224920200	Weak transcription	Right Atrium	heart
2	chr1:224907000-224920200	Weak transcription	Gastric	stomach
3	chr1:224909200-224920200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr1:224910400-224920200	Weak transcription	Fetal Thymus	thymus
5	chr1:224911200-224920200	Weak transcription	Skeletal Muscle Male	skeletal muscle
6	chr1:224912800-224916000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr1:224913000-224915200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr1:224913000-224915600	Enhancers	Dnd41	blood
9	chr1:224913000-224916200	Enhancers	Cortex derived primary cultured neurospheres	brain
10	chr1:224913000-224916800	Enhancers	NHDF-Ad	bronchial
11	chr1:224913200-224915800	Enhancers	Breast Myoepithelial Primary Cells	Breast
12	chr1:224913600-224916000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
13	chr1:224913800-224915400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr1:224913800-224915600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr1:224913800-224915800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
16	chr1:224913800-224916000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr1:224913800-224916200	Enhancers	HMEC	breast
18	chr1:224913800-224916200	Enhancers	NHLF	lung
19	chr1:224913800-224916200	Enhancers	Osteobl	bone
20	chr1:224914000-224915400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
21	chr1:224914000-224915400	Enhancers	HSMMtube	muscle
22	chr1:224914000-224915600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
23	chr1:224914000-224916000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
24	chr1:224914000-224916000	Enhancers	NH-A	brain
25	chr1:224914200-224915400	Enhancers	Brain Hippocampus Middle	brain
26	chr1:224914200-224915800	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
27	chr1:224914200-224916200	Enhancers	Muscle Satellite Cultured Cells	--
28	chr1:224914400-224915400	Enhancers	Brain Cingulate Gyrus	brain
29	chr1:224914400-224920200	Weak transcription	Adipose Nuclei	Adipose
30	chr1:224914600-224915200	Enhancers	NHEK	skin
31	chr1:224914600-224915400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
32	chr1:224914800-224915600	Enhancers	ES-I3 Cell Line	embryonic stem cell
33	chr1:224914800-224915600	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
34	chr1:224914800-224916800	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
35	chr1:224914800-224924400	Weak transcription	Ovary	ovary
36	chr1:224915000-224915600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
37	chr1:224915000-224924400	Weak transcription	Brain Anterior Caudate	brain

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