Variant report

Variant	rs74147805
Chromosome Location	chr1:221816596-221816597
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs11118752	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12064948	1.00[AMR][1000 genomes]
rs12065046	1.00[AMR][1000 genomes]
rs12077254	1.00[AMR][1000 genomes]
rs12085787	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12086226	1.00[AMR][1000 genomes]
rs12087035	1.00[AMR][1000 genomes]
rs12089533	1.00[AMR][1000 genomes]
rs12090444	1.00[AMR][1000 genomes]
rs12095681	1.00[AMR][1000 genomes]
rs57185653	1.00[AMR][1000 genomes]
rs60434045	1.00[AMR][1000 genomes]
rs74144283	1.00[AMR][1000 genomes]
rs74144295	1.00[AMR][1000 genomes]
rs74145351	1.00[AMR][1000 genomes]
rs74145380	1.00[AMR][1000 genomes]
rs74146103	1.00[AMR][1000 genomes]
rs9943267	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv997685	chr1:220993527-221863416	Enhancers Weak transcription Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
2	nsv535299	chr1:220993527-221863416	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
3	nsv873200	chr1:221644180-221843191	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:221811400-221817000	Weak transcription	Brain Germinal Matrix	brain
2	chr1:221811600-221818000	Weak transcription	Brain Substantia Nigra	brain
3	chr1:221815600-221818200	Weak transcription	Fetal Stomach	stomach
4	chr1:221815800-221816800	Weak transcription	Fetal Lung	lung
5	chr1:221816400-221816800	Enhancers	GM12878-XiMat	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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