Variant report

Variant	rs74156120
Chromosome Location	chr1:210425076-210425077
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:12)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:12 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr1:210425064..210427763-chr1:210429137..210431725,3	MCF-7	breast:
2	chr1:210313972..210316201-chr1:210423103..210425366,2	MCF-7	breast:
3	chr1:210422501..210425086-chr1:210426035..210428636,3	MCF-7	breast:
4	chr1:210424216..210425917-chr1:210546411..210548100,2	K562	blood:
5	chr1:210424564..210426699-chr1:210446134..210449273,3	MCF-7	breast:
6	chr1:210424072..210425856-chr1:210442744..210445693,2	MCF-7	breast:
7	chr1:210423750..210428226-chr1:210545532..210548687,6	MCF-7	breast:
8	chr1:210417487..210419206-chr1:210423476..210426436,2	MCF-7	breast:
9	chr1:210023576..210025392-chr1:210424687..210427051,2	MCF-7	breast:
10	chr1:210403920..210408133-chr1:210424303..210428339,6	MCF-7	breast:
11	chr1:210404569..210409056-chr1:210423278..210427525,11	MCF-7	breast:
12	chr1:210424408..210427087-chr1:210436244..210439135,3	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000203706	Chromatin interaction
ENSG00000200972	Chromatin interaction
ENSG00000082497	Chromatin interaction

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs55684632	1.00[AMR][1000 genomes]
rs55934820	1.00[AMR][1000 genomes]
rs56017967	1.00[AMR][1000 genomes]
rs57841462	1.00[AMR][1000 genomes]
rs74156110	1.00[AMR][1000 genomes]
rs74156112	1.00[AMR][1000 genomes]
rs74156113	1.00[AMR][1000 genomes]
rs74156114	1.00[AMR][1000 genomes]
rs74156116	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014034	chr1:209759648-210501731	Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
2	nsv8769	chr1:210403509-210564588	Enhancers Flanking Bivalent TSS/Enh Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	126 gene(s)	inside rSNPs	diseases
3	esv3373545	chr1:210423754-210426302	Weak transcription Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:119 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:210423600-210428000	Enhancers	Fetal Heart	heart
2	chr1:210423800-210426600	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr1:210424000-210425200	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr1:210424000-210425200	Active TSS	iPS-15b Cell Line	embryonic stem cell
5	chr1:210424000-210425400	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
6	chr1:210424000-210425400	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr1:210424000-210425600	Flanking Active TSS	Primary hematopoietic stem cells	blood
8	chr1:210424000-210425600	Flanking Bivalent TSS/Enh	Monocytes-CD14+_RO01746	blood
9	chr1:210424000-210426400	Active TSS	ES-I3 Cell Line	embryonic stem cell
10	chr1:210424000-210426400	Enhancers	Fetal Brain Male	brain
11	chr1:210424000-210426600	Active TSS	ES-WA7 Cell Line	embryonic stem cell
12	chr1:210424000-210426600	Active TSS	H9 Cell Line	embryonic stem cell
13	chr1:210424200-210425200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
14	chr1:210424200-210425200	Active TSS	Aorta	Aorta
15	chr1:210424200-210425200	Active TSS	Brain Cingulate Gyrus	brain
16	chr1:210424200-210425200	Active TSS	Brain Inferior Temporal Lobe	brain
17	chr1:210424200-210425200	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
18	chr1:210424200-210425200	Active TSS	Colon Smooth Muscle	Colon
19	chr1:210424200-210425200	Active TSS	Fetal Brain Female	brain
20	chr1:210424200-210425200	Bivalent Enhancer	Fetal Thymus	thymus
21	chr1:210424200-210425400	Flanking Active TSS	Primary B cells from cord blood	blood
22	chr1:210424200-210425400	Flanking Active TSS	Adipose Nuclei	Adipose
23	chr1:210424200-210425400	Active TSS	Brain Anterior Caudate	brain
24	chr1:210424200-210425400	Active TSS	Pancreatic Islets	Pancreatic Islet
25	chr1:210424200-210425400	Flanking Active TSS	HMEC	breast
26	chr1:210424200-210425600	Flanking Active TSS	Muscle Satellite Cultured Cells	--
27	chr1:210424200-210425600	Active TSS	Colonic Mucosa	Colon
28	chr1:210424200-210425600	Flanking Active TSS	HUVEC	blood vessel
29	chr1:210424200-210425800	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
30	chr1:210424200-210426200	Bivalent Enhancer	Primary T helper memory cells from peripheral blood 1	blood
31	chr1:210424200-210426600	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
32	chr1:210424400-210425200	Bivalent/Poised TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
33	chr1:210424400-210425200	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
34	chr1:210424400-210425200	Active TSS	Breast Myoepithelial Primary Cells	Breast
35	chr1:210424400-210425200	Bivalent/Poised TSS	Primary T helper naive cells fromperipheralblood	blood
36	chr1:210424400-210425200	Active TSS	Brain Angular Gyrus	brain
37	chr1:210424400-210425200	Active TSS	Left Ventricle	heart
38	chr1:210424400-210425200	Active TSS	Placenta Amnion	Placenta Amnion
39	chr1:210424400-210425400	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
40	chr1:210424400-210425400	Bivalent/Poised TSS	Duodenum Smooth Muscle	Duodenum
41	chr1:210424400-210425400	Active TSS	Ovary	ovary
42	chr1:210424400-210425600	Flanking Bivalent TSS/Enh	Foreskin Melanocyte Primary Cells skin03	Skin
43	chr1:210424400-210425600	Flanking Bivalent TSS/Enh	Fetal Intestine Small	intestine
44	chr1:210424400-210426000	Bivalent Enhancer	Liver	Liver
45	chr1:210424600-210425200	Active TSS	HUES6 Cell Line	embryonic stem cell
46	chr1:210424600-210425200	Flanking Bivalent TSS/Enh	IMR90 fetal lung fibroblasts Cell Line	lung
47	chr1:210424600-210425200	Active TSS	iPS-18 Cell Line	embryonic stem cell
48	chr1:210424600-210425200	Active TSS	iPS-20b Cell Line	embryonic stem cell
49	chr1:210424600-210425200	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
50	chr1:210424600-210425200	Bivalent Enhancer	Primary T cells fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links