Variant report

Variant	rs74157510
Chromosome Location	chr1:211368855-211368856
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:211366897..211369735-chr1:211430540..211432922,2	K562	blood:

Variant related genes	Relation type
ENSG00000117625	Chromatin interaction

Extended variants
information (count: 57 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:54)

rs_ID	r²[population]
rs11119665	1.00[EUR][1000 genomes]
rs11119700	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11119701	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11119703	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11119704	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12060095	1.00[AMR][1000 genomes]
rs12061710	1.00[EUR][1000 genomes]
rs12062424	1.00[EUR][1000 genomes]
rs12063183	1.00[EUR][1000 genomes]
rs12063554	1.00[EUR][1000 genomes]
rs12064954	1.00[EUR][1000 genomes]
rs12065044	1.00[AMR][1000 genomes]
rs12065047	1.00[EUR][1000 genomes]
rs12067738	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12068018	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12069230	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12070528	1.00[EUR][1000 genomes]
rs12071874	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12073144	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12076586	1.00[EUR][1000 genomes]
rs12078498	1.00[EUR][1000 genomes]
rs12079263	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12079934	1.00[EUR][1000 genomes]
rs12084637	1.00[EUR][1000 genomes]
rs12086827	1.00[EUR][1000 genomes]
rs12089737	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12089830	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12089911	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12090848	1.00[AFR][1000 genomes]
rs12096590	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12724746	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28523567	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57004496	1.00[AMR][1000 genomes]
rs60471497	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60789444	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73071099	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73072803	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73072808	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73072811	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73072815	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73072817	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73073474	1.00[AMR][1000 genomes]
rs73073478	1.00[EUR][1000 genomes]
rs73073488	1.00[EUR][1000 genomes]
rs73075406	1.00[AMR][1000 genomes]
rs73075420	1.00[EUR][1000 genomes]
rs73075431	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73075455	1.00[EUR][1000 genomes]
rs73075457	1.00[EUR][1000 genomes]
rs73075496	1.00[EUR][1000 genomes]
rs73077469	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73077471	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7547391	1.00[EUR][1000 genomes]
rs7554031	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3524016	chr1:211368129-211372077	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	esv3424962	chr1:211368579-211371827	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	esv2456740	chr1:211368828-211371447	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:211366000-211371400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr1:211368200-211369000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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