Variant report

Variant	rs74158940
Chromosome Location	chr1:210791357-210791358
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs55848230	0.83[AFR][1000 genomes]
rs56014395	0.88[AFR][1000 genomes]
rs57766698	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58481184	0.90[AFR][1000 genomes]
rs60717945	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74156004	0.90[AFR][1000 genomes]
rs74156014	0.90[AFR][1000 genomes]
rs74158944	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74158946	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74158951	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74158953	0.88[AFR][1000 genomes]
rs74158954	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74158957	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74158958	0.90[AFR][1000 genomes]
rs74158959	0.86[AFR][1000 genomes]
rs74158961	0.90[AFR][1000 genomes]
rs74158963	0.90[AFR][1000 genomes]
rs74158966	0.90[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv873148	chr1:210665583-210994339	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
2	nsv873149	chr1:210749312-210793972	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers Strong transcription	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv522480	chr1:210779936-210848344	Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers	Chromatin interactive region lncRNA miRNA target site	n/a	inside rSNPs	diseases
4	esv1825229	chr1:210789477-210854976	Enhancers ZNF genes & repeats Weak transcription Genic enhancers Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA miRNA target site	n/a	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:210789800-210791800	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
2	chr1:210790400-210801800	Weak transcription	Pancreas	Pancrea
3	chr1:210790600-210796800	Weak transcription	Ovary	ovary
4	chr1:210790600-210807000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr1:210790800-210795000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
6	chr1:210791000-210792200	Enhancers	HSMMtube	muscle

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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