Variant report

Variant	rs74158946
Chromosome Location	chr1:210796376-210796377
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs55848230	0.90[AFR][1000 genomes]
rs56014395	0.96[AFR][1000 genomes]
rs57766698	1.00[AMR][1000 genomes]
rs58481184	0.98[AFR][1000 genomes]
rs60717945	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74156004	0.98[AFR][1000 genomes]
rs74156014	0.98[AFR][1000 genomes]
rs74158940	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74158944	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74158951	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74158953	0.96[AFR][1000 genomes]
rs74158954	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74158957	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74158958	0.98[AFR][1000 genomes]
rs74158959	0.94[AFR][1000 genomes]
rs74158961	0.98[AFR][1000 genomes]
rs74158963	0.98[AFR][1000 genomes]
rs74158966	0.98[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv873148	chr1:210665583-210994339	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
2	nsv522480	chr1:210779936-210848344	Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers	Chromatin interactive region lncRNA miRNA target site	n/a	inside rSNPs	diseases
3	esv1825229	chr1:210789477-210854976	Enhancers ZNF genes & repeats Weak transcription Genic enhancers Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA miRNA target site	n/a	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:210790400-210801800	Weak transcription	Pancreas	Pancrea
2	chr1:210790600-210796800	Weak transcription	Ovary	ovary
3	chr1:210790600-210807000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr1:210793800-210797800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
5	chr1:210795000-210801400	Weak transcription	Aorta	Aorta
6	chr1:210795200-210797400	Weak transcription	Brain Hippocampus Middle	brain
7	chr1:210795200-210798200	Weak transcription	Brain Anterior Caudate	brain
8	chr1:210795200-210799200	Strong transcription	HSMMtube	muscle
9	chr1:210795400-210797800	Weak transcription	Brain Angular Gyrus	brain
10	chr1:210795400-210797800	Weak transcription	Brain Substantia Nigra	brain
11	chr1:210795400-210822600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
12	chr1:210795800-210797400	Weak transcription	HSMM	muscle
13	chr1:210795800-210797600	Weak transcription	Brain Inferior Temporal Lobe	brain
14	chr1:210795800-210797800	Weak transcription	Brain Cingulate Gyrus	brain
15	chr1:210795800-210806600	Weak transcription	Primary hematopoietic stem cells	blood
16	chr1:210796200-210796400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
17	chr1:210796200-210801400	Weak transcription	Left Ventricle	heart

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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